Glyma19g37890 - SoyBase

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Report for Sequence Feature Glyma19g37890

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44979743
stop:	44981657
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03840	AT	Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein \| chr5:1024760-1025796 REVERSE LENGTH=177	SoyBase	E_val: 1.00E-97	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0090344	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cell aging	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031982	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vesicle	SoyBase	N/A	ISS
GO:0003712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity	SoyBase	N/A	ISS
GO:0008429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding	SoyBase	N/A	ISS
KOG3346	KOG	Phosphatidylethanolamine binding protein	JGI		ISS
PTHR11362	Panther	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	JGI		ISS
PF01161	PFAM	Phosphatidylethanolamine-binding protein	JGI		ISS
UniRef100_D5ID20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dt1 n=3 Tax=Glycine RepID=D5ID20_SOYBN	SoyBase	E_val: 4.00E-125	ISS
UniRef100_D5ID20	UniRef	Annotation by Michelle Graham. Best UniRef hit: Dt1 n=3 Tax=Glycine RepID=D5ID20_SOYBN	SoyBase	E_val: 4.00E-125	ISS

Proteins Associated with Glyma19g37890

Locus	Gene Symbol	Protein Name
	Dt1	Determinancy gene 1
	TFL1	Terminal Flower 1

Expression Patterns of Glyma19g37890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37890

Paralog	Evidence	Comments
Glyma03g35250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g194300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37890

Limit To All Plant Sequences

>Glyma19g37890.1   sequence type=CDS   gene model=Glyma19g37890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAATGCCTTTAGAGCCTCTAATAGTGGGGAGAGTCATAGGAGAAGTTCTTGATTCTTTCACCACAAGCACAAAAATGACTGTGAGTTACAACAAGAAGCAAGTTTACAATGGCCATGAGCTCTTCCCTTCCACTGTCAACACCAAGCCCAAGGTTGAGATTGAGGGTGGTGATATGAGGTCCTTCTTTACACTGATCATGACTGACCCTGATGTTCCTGGCCCTAGTGACCCTTATCTGAGAGAGCACTTGCACTGGATAGTGACAGATATTCCAGGCACAACAGATGCCACATTTGGGAAAGAGTTGGTGAGCTATGAGGTCCCAAAGCCTAATATTGGAATCCATAGGTTTGTGTTTGTCCTGTTCAAGCAAAAGCGTAGACAGTGTGTTACTCCACCCACTTCAAGGGACCACTTCAACACACGCAAATTCGCAGCAGAGAACGACCTTGGCCTCCCTGTGGCTGCTGTCTACTTCAATGCACAGAGGGAAACGGCTGCAAGAAGACGCTAG

Predicted protein sequences of Glyma19g37890

Limit To All Plant Sequences

>Glyma19g37890.1   sequence type=predicted peptide   gene model=Glyma19g37890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKMPLEPLIVGRVIGEVLDSFTTSTKMTVSYNKKQVYNGHELFPSTVNTKPKVEIEGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGKELVSYEVPKPNIGIHRFVFVLFKQKRRQCVTPPTSRDHFNTRKFAAENDLGLPVAAVYFNAQRETAARRR*

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