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Report for Sequence Feature Glyma.11g238800

Feature Type:gene_model
Chromosome:Gm11
Start:33319226
stop:33322244
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22240.1AT myo-inositol-1-phosphate synthase 2 JGI N/AIEA
GO:0006021GO-bp inositol biosynthetic process EnsemblGenomesN/AIEA
GO:0006021GO-bp inositol biosynthetic process JGI N/AIEA
GO:0008654GO-bp phospholipid biosynthetic process EnsemblGenomesN/AIEA
GO:0008654GO-bp phospholipid biosynthetic process JGI N/AIEA
GO:0004512GO-mf inositol-3-phosphate synthase activity EnsemblGenomesN/AIEA
GO:0004512GO-mf inositol-3-phosphate synthase activity JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0693 KOG Myo-inositol-1-phosphate synthase JGI N/AIEA
PTHR11510Panther MYO-INOSITOL-1 PHOSPHATE SYNTHASE JGI N/AIEA
PF01658PFAM Myo-inositol-1-phosphate synthase JGI N/AIEA
PF07994PFAM Myo-inositol-1-phosphate synthase JGI N/AIEA
PWY-2301SoyCyc9 myo-inositol biosynthesis Plant Metabolic Network ISS
PWY-4661SoyCyc9 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) Plant Metabolic Network ISS
GN7V-61214SoyCyc9-rxn inositol-3-phosphate synthase Plant Metabolic Network ISS

LocusGene SymbolProtein Name
MIPS myo-inositol-3-phosphate synthase

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.11g238800 not represented in the dataset

Glyma.11g238800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at SoyMine

Gene information in SoyMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.18g018600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments


>Glyma.11g238800.1 sequence-type=CDS polypeptide=Glyma.11g238800.1.p locus=Glyma.11g238800 ID=Glyma.11g238800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCATCGAGAATTTTAAGGTTGAGTGTCCTAATGTGAAGTACACCGAGACTGAGATTCAGTCCGTGTACAACTACGAAACCACCGAACTTGTTCACGAGAACAGGAATGGCACCTATCAGTGGATTGTCAAACCCAAATCTGTCAAATACGAATTTAAAACCAACATCCATGTTCCTAAATTAGGGGTAATGCTTGTGGGTTGGGGTGGAAACAACGGCTCAACCCTCACCGGTGGTGTTATTGCTAACCGAGAGGGCATTTCATGGGCTACAAAGGACAAGATTCAACAAGCCAATTACTTTGGCTCCCTCACCCAAGCCTCAGCTATCCGAGTTGGGTCCTTCCAGGGAGAGGAAATCTATGCCCCATTCAAGAGCCTGCTTCCAATGGTTAACCCTGACGACATTGTGTTTGGGGGATGGGATATCAGCAACATGAACCTGGCTGATGCCATGGCCAGGGCAAAGGTGTTTGACATCGATTTGCAGAAGCAGTTGAGGCCTTACATGGAATCCATGCTTCCACTCCCCGGAATCTATGACCCGGATTTCATTGCTGCCAACCAAGAGGAGCGTGCCAACAACGTCATCAAGGGCACAAAGCAAGAGCAAGTTCAACAAATCATCAAAGACATCAAGGCGTTTAAGGAAGCCACCAAAGTGGACAAGGTGGTTGTACTGTGGACTGCCAACACAGAGAGGTACAGTAATTTGGTTGTGGGCCTTAATGACACCATGGAGAATCTCTTGGCTGCTGTGGACAGAAATGAGGCTGAGATTTCTCCTTCCACCTTGTATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATTAATGGAAGCCCTCAGAACACTTTTGTACCAGGGCTGATTGATCTTGCCATCGCGAGGAACACTTTGATTGGTGGAGATGACTTCAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTCCTTGTGGGGGCTGGTATCAAGCCAACATCTATAGTCAGTTACAACCATCTGGGAAACAATGATGGTATGAATCTTTCGGCTCCACAAACTTTCCGTTCCAAGGAAATCTCCAAGAGCAACGTTGTTGATGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCAGACCATGTTGTTGTTATTAAGTATGTGCCTTACGTAGGGGACAGCAAGAGAGCCATGGATGAGTACACTTCAGAGATATTCATGGGTGGAAAGAGCACCATTGTTTTGCACAACACATGCGAGGATTCCCTCTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTCAGCACTAGAATCGAGTTTAAAGCTGAAAATGAGGGAAAATTCCACTCATTCCACCCAGTTGCTACCATCCTCAGCTACCTCACCAAGGCTCCTCTGGTTCCACCGGGTACACCAGTGGTGAATGCATTGTCAAAGCAGCGTGCAATGCTGGAAAACATAATGAGGGCTTGTGTTGGATTGGCCCCAGAGAATAACATGATTCTCGAGTACAAGTGA

>Glyma.11g238800.1.p sequence-type=predicted peptide transcript=Glyma.11g238800.1 locus=Glyma.11g238800 ID=Glyma.11g238800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFIENFKVECPNVKYTETEIQSVYNYETTELVHENRNGTYQWIVKPKSVKYEFKTNIHVPKLGVMLVGWGGNNGSTLTGGVIANREGISWATKDKIQQANYFGSLTQASAIRVGSFQGEEIYAPFKSLLPMVNPDDIVFGGWDISNMNLADAMARAKVFDIDLQKQLRPYMESMLPLPGIYDPDFIAANQEERANNVIKGTKQEQVQQIIKDIKAFKEATKVDKVVVLWTANTERYSNLVVGLNDTMENLLAAVDRNEAEISPSTLYAIACVMENVPFINGSPQNTFVPGLIDLAIARNTLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVNSNAILYEPGEHPDHVVVIKYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNTCEDSLLAAPIILDLVLLAELSTRIEFKAENEGKFHSFHPVATILSYLTKAPLVPPGTPVVNALSKQRAMLENIMRACVGLAPENNMILEYK*







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