Report for Sequence Feature Glyma20g35570
Feature Type: gene_model
Chromosome: Gm20
Start: 43844121
stop: 43846505
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g35570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G44400 AT
Annotation by Michelle Graham. TAIR10: FAD-binding Berberine family protein | chr5:17886365-17888071 REVERSE LENGTH=537
SoyBase E_val: 6.00E-137 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0008762 GO-mf
Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity
SoyBase N/A ISS
GO:0009055 GO-mf
Annotation by Michelle Graham. GO Molecular Function: electron carrier activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016614 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors
SoyBase N/A ISS
GO:0050660 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding
SoyBase N/A ISS
KOG1231
KOG
Proteins containing the FAD binding domain
JGI ISS
PTHR11748 Panther
D-LACTATE DEHYDROGENASE
JGI ISS
PTHR11748:SF29 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01565 PFAM
FAD binding domain
JGI ISS
PF08031 PFAM
Berberine and berberine like
JGI ISS
UniRef100_G7L6C2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Reticuline oxidase n=1 Tax=Medicago truncatula RepID=G7L6C2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233DCDB UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233DCDB related cluster n=1 Tax=unknown RepID=UPI000233DCDB
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g35570
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g35570
Paralog Evidence Comments
Glyma10g32070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g35570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g213100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g35570
Coding sequences of Glyma20g35570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g35570.1 sequence type=CDS gene model=Glyma20g35570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCTACTTCCTCAAAAGATTGTGCCTTCTATGCTTCCTCTTGTTATCCTTTGCTGTTTCACTGTTTTCATGTGCTTCACTCAGAGGCTTGGCTTCTTGCTTGGATAATCACAATATCAAAAACTTTACCACGTTCCCTTACAAAGAACATGATCATTCCTCTGCCTATAGTTACTTCAAAATTCTCAATTTTTCCATCCAAAACCTTCGGTTTGCAGAACCCGTGATTCCTAAGCCAATAGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTGCAGAAAAGTGTAGCATGCTGTAGAGAAGGCTCCATGGAAATAAGAGTAAGATGTGGTGGACACAGCTATGAAGGGACTTCATATGTTGCTGATGATGGCACTCCTTTTGTCATCATTGATATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGAAAGCAATGAACATGGATTCTCAGGTGGGTCATGTCCAACTGTTGGAGTTGGAGGGCACATTGGTGGTGGTGGATTTGGTTTGTTGTCTAGAAAGTATGGTCTTGCGGCAGATAACGTGGTGGATGCCCTTCTTGTCGATGCTAACGGAAAATTGTTCGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCCATTAGAGGAGGAGGAGGTGGTCTTTGGGGGATCATTTATGCCTGGAAAATCCAGGTGTTGAAAGTGCCTCAAGTTGTAACTAGTTTCACTGTATCAAGAACTGGCACAAAAAGTCATGTTGCCAATCTAGTGCACAAATGGCAATATGTGGCACCAAACTTGGAAGATGACTTCTACTTGTCATGCTTGGTTGGTGCTGGTCTGCCCCAAGCTAAAACCACAGGGTTATCAACAACATTTAATGGCTTCTATCTCGGTCCTAGGGCCAGTGCCACATCCATCCTAAACCAGGCTTTTCCTGAGTTGAGTATTGCAGAAGAAGAATGCATAGAAATGAGTTGGATTCAGTCAATTGTTTTCTTCTCTGGCCTAAGCGATGGAGCCTCGGTCTCTGACTTGAAGAACAGGTATCTGCAAGAAAAAGAATATTTCAAGGCCAAATCAGATTATGTAAAGAAAAATGTTCCTCTTGTGGGCATAGAAACTGCACTAGACATCCTAGAAAAGGAGCCTAAGGGATATGTTGTTCTGGACCCTTATGGTGGCATGATGCATAATATAAGCAGTGAGTCCATTGCTTTTCCCCACAGAAGAGGAAACCTGTTTACAATTCAGTACCTGATCTATTGGAAAGAAGCTGACAATGACAAAAGCAGCGATTATGTTGATTGGATAAGAGGGTTCTATGCTGCTATGACTCCCTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTGATGGAGGGGATTGGTAATGGTGCTAATATGAAAGATGCTGTGGAACATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGATTGGTGAGGGCCAAAACTCTGATTGATCCTAACAATGTTTTCACCAATGATCAGGGCATTCCTCCCATATCTTTGACCAGTCCCTATGCCAAAGCGCAGAGCAAATAA
Predicted protein sequences of Glyma20g35570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g35570.1 sequence type=predicted peptide gene model=Glyma20g35570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFYFLKRLCLLCFLLLSFAVSLFSCASLRGLASCLDNHNIKNFTTFPYKEHDHSSAYSYFKILNFSIQNLRFAEPVIPKPIAIVLPESLEQLQKSVACCREGSMEIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQESNEHGFSGGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLVDANGKLFDRETMGEDVFWAIRGGGGGLWGIIYAWKIQVLKVPQVVTSFTVSRTGTKSHVANLVHKWQYVAPNLEDDFYLSCLVGAGLPQAKTTGLSTTFNGFYLGPRASATSILNQAFPELSIAEEECIEMSWIQSIVFFSGLSDGASVSDLKNRYLQEKEYFKAKSDYVKKNVPLVGIETALDILEKEPKGYVVLDPYGGMMHNISSESIAFPHRRGNLFTIQYLIYWKEADNDKSSDYVDWIRGFYAAMTPFVSWGPRAAYINYMDFDLGVMEGIGNGANMKDAVEHARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNDQGIPPISLTSPYAKAQSK*
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