Glyma20g28670 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g28670

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37590651
stop:	37591778
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67260	AT	Annotation by Michelle Graham. TAIR10: TCP family transcription factor \| chr1:25168152-25169307 REVERSE LENGTH=351	SoyBase	E_val: 1.00E-25	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_Q84N90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LEGCYC1B n=1 Tax=Cadia purpurea RepID=Q84N90_9FABA	SoyBase	E_val: 2.00E-94	ISS
UniRef100_UPI000233E1DA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E1DA related cluster n=1 Tax=unknown RepID=UPI000233E1DA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28670

Paralog	Evidence	Comments
Glyma10g39141	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g148500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g28670

Limit To All Plant Sequences

>Glyma20g28670.1   sequence type=CDS   gene model=Glyma20g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCTTCCACATATGACTCCTCTAACCTTTTCCCTAACTTCCCTTCGTCTTCTTACCCTATCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGCCACACCCTTCTTGATGACCACCCTCTTGTTGTTCCCGCCGGCCTCATACATGATCCTCCATTACTCCCTGAAGAAACCGTTGCCAATTTTGCAGTTGCAGCTGACTGCACTGCCGCCATGCTTGAACACGATGCAGCAAACACTAACTATGGTTCCCACTATGGTAGCAGCGTTTCCAATTTTCTCACCCAGAAACCTGCTGCAGCCACAGCCAAAAAAGACAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGGAGGGTGAGATTATCAAGCGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCTTCGATTGGCTCTTCACAAAGTCTGAGAATGCAATCAAAGAACTAGCCCGAAGTAAGCATAGCGGCAGTGTTAGTCGGGGTGACATTAAGTATTCCCGCTACCCGTCTGTGGATTCAAACAACAACAACAAATCATTGGTGGATGGTGGTGATGCTTCCCGAGGGAGGAAGTTGAAATGGGCACAGAGGGATGATGTTTGTGTTCAGAACAAAAAAGAGTCAAGGGAAAGGGCAAGGGCAAGGGCAAGAGAAAGGACTTGTTACAAGATGTGTAGCTGTAGTAGAAGGGTGCAGCAGAAGGACTCTGATGAAAGGTTCCCTGCAACTACAAACACTCAAATGCTACACCAATTGAGGTCTTCCATTCAGCCTGAACTTGAAGATCAACCTCGTGCAAGATGGGTTCAGCCTTATTATAATAACCCTTATTTCATTGATAATGAAGCACCAAGAAATGGCTTTAACGTCATCGAAGAATCTATTATGATAAAAAGGAACATGAAGCCTTCATCTCACCAAAACCTTGTGATCCCTAGGGATGCAAGTTTCAACAACAATGAGTTCCCCCTATTACCCTATTCCAGTACTACTCCAAACTGGGATAGTACTAATGGGGCCGTTAACTTTGGTGGAATAAGCACGATGAATCTATCTACATGTTTCATGAACCCGTGGTAA

Predicted protein sequences of Glyma20g28670

Limit To All Plant Sequences

>Glyma20g28670.1   sequence type=predicted peptide   gene model=Glyma20g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSTYDSSNLFPNFPSSSYPILPFLIDPENDFASHTLLDDHPLVVPAGLIHDPPLLPEETVANFAVAADCTAAMLEHDAANTNYGSHYGSSVSNFLTQKPAAATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTFDWLFTKSENAIKELARSKHSGSVSRGDIKYSRYPSVDSNNNNKSLVDGGDASRGRKLKWAQRDDVCVQNKKESRERARARARERTCYKMCSCSRRVQQKDSDERFPATTNTQMLHQLRSSIQPELEDQPRARWVQPYYNNPYFIDNEAPRNGFNVIEESIMIKRNMKPSSHQNLVIPRDASFNNNEFPLLPYSSTTPNWDSTNGAVNFGGISTMNLSTCFMNPW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain