Glyma20g23960 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g23960

Feature Type:	gene_model
Chromosome:	Gm20
Start:	33681687
stop:	33686199
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g23960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35140	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr4:16723873-16726477 REVERSE LENGTH=496	SoyBase	E_val: 0	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1334	KOG	WD40 repeat protein	JGI		ISS
PTHR15574	Panther	WD REPEAT DOMAIN-CONTAINING FAMILY	JGI		ISS
PTHR15574:SF16	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9S5H1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S5H1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NF75	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NF75_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g23960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g23960

Paralog	Evidence	Comments
Glyma10g43020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g23960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g105700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g23960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g23960

Limit To All Plant Sequences

>Glyma20g23960.1   sequence type=CDS   gene model=Glyma20g23960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAGAGGAAGGCGCTTCCAGATCTTTGCAATCGAGAAGTCGGCCACCTATCCCCCAGAAATTTCGCTCTCCGTCTTGGCTCTTCCGAGGATCTTGTCCTTCGACTTCAATTACTGAGGAATCTGCAAAAGCACCGAGGTTGTGTCAACGCTGTGAGCTTCAATGCAGATGGTGACATTCTGGTCTCTGGTTCCGATGATTGTGGGATTATTCTCTGGGACTGGGAAACTGGCCGCATTAGACTCTCCTTCCATTCTGGTCATTCTAACAATGTTTTCCAGGCCAAGATCATGCCTCACTCTGATGATCGAACCATTGTCACCTGTGCTGCCGATGGACAGGTGAGACATGCTCAACTTCTTGAAAATGGACGAGTCGAAACTAAGTGTCTGGCCAAGCATCAAGGAAGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATTTTTTATACCTGTGGTGAAGATGGATTAGTGCAGCGTTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATGCCAGCCAATCAAGGATAGGTGGAGTTACATGCCAGTCATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCTAATCTCTTTGCGGTTGCTGGCTCTGATGAGTATGCTCGACTTTATGATATTCGCAAGTATAAATGGGACGGATCAACTGATTTTGGTCAACCAACCAACTTCTTTTGCCCTCCACACTTGATTGGCGATCAGCAAGTTGGAATAACAGGCTTGGCCTTTTCTGAACTAAGAGAGCTGCTTGTGTCATACAATGATGAGCTTATTTATCTTTTTACCCAAGATATGGGTTTGGGACCAAACCCCCCTGATCCTGTGTCTCCTAAATCTATGAACAGTGATGCAAGTGAAATTGGATTTAGTCATGGATCTGTGTCATCTCAATCCAAGATGGATGCTGATGAGAAAGTCACCCCGCAAGTTTTTAAGGGACACAGGAATTGTGAGACGGTGAAGGGTGTTAACTTTTTTGGACCTAAATGTGAGTATGTGGTGAGTGGGTCAGATTGTGGTCGGATTTTCATATGGAAAAAGAAAAGTGGTCAGCTTATTCGTGTCATGGAAGCAGATAAGTATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCCAGCAGTGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTCGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCGAAGGCTAAGGGCTGGATGTACCGGATAGCTTATCCTGAAGACCTGATGCAACTGATTTCACTTCCAAGACGAAGGGTCAGGACAGAAAGCAATGGAGAAAACTCATCCACAGATCGAGACCTTCTACAGTTGATATTGACATTCAATGCCAATAGTGACAGTTCTAACGAAGATGATGACGATGGTGATACAACCAGCCAAGACGACTTGTTCAGTTAG

Predicted protein sequences of Glyma20g23960

Limit To All Plant Sequences

>Glyma20g23960.1   sequence type=predicted peptide   gene model=Glyma20g23960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKRKALPDLCNREVGHLSPRNFALRLGSSEDLVLRLQLLRNLQKHRGCVNAVSFNADGDILVSGSDDCGIILWDWETGRIRLSFHSGHSNNVFQAKIMPHSDDRTIVTCAADGQVRHAQLLENGRVETKCLAKHQGRAHKLAIEPGSPHIFYTCGEDGLVQRFDLRTGAATELFTCQPIKDRWSYMPVIHLNAIAIDPRNPNLFAVAGSDEYARLYDIRKYKWDGSTDFGQPTNFFCPPHLIGDQQVGITGLAFSELRELLVSYNDELIYLFTQDMGLGPNPPDPVSPKSMNSDASEIGFSHGSVSSQSKMDADEKVTPQVFKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWKKKSGQLIRVMEADKYVVNCIESHPHTMVLASSGIEHDIKIWTPKALEKATLPKNIEQKPKAKGWMYRIAYPEDLMQLISLPRRRVRTESNGENSSTDRDLLQLILTFNANSDSSNEDDDDGDTTSQDDLFS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain