SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma20g03988

Feature Type:gene_model
Chromosome:Gm20
Start:3996373
stop:4003705
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g03988
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25540AT Annotation by Michelle Graham. TAIR10: phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE LENGTH=836 SoyBaseE_val: 9.00E-36ISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0031349GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of defense response SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003713GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR12433Panther PROSTATE TUMOR OVEREXPRESSED GENE 1 (PTOV1) JGI ISS
PTHR12433:SF5Panther OS09G0306700 PROTEIN JGI ISS
PF11265PFAM Mediator complex subunit 25 von Willebrand factor type A JGI ISS
UniRef100_Q7XYY2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 25 n=2 Tax=Arabidopsis thaliana RepID=MED25_ARATH SoyBaseE_val: 4.00E-33ISS
UniRef100_UPI000233768EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233768E related cluster n=1 Tax=unknown RepID=UPI000233768E SoyBaseE_val: 1.00E-35ISS

Expression Patterns of Glyma20g03988
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g03988 not represented in the dataset
Glyma20g03988 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g03988 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g031800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g03988
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g03988
>Glyma20g03988.2   sequence type=transcript   gene model=Glyma20g03988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTATGTATATGATGGAAAGTCTAGATTTCTATAAAAAGTGGTTGAGTTGGAATAGTGGCAACTACCTTGCTTTCTGGTCAGTTTTAATTTTTGTATCAAGGGAGCTAATCATCATTGTGAGGTGGGTCTGGTTATGTATAATGACAACTCCGACCTAGGGTCGAACGTCCAATATATCCATTGGACAAGAGATGTGGATTATTTTTTAGGTATCCTATCATGTTTAGTTTTCAAAGGGGATAGTTTAAATCAAAATACCATGGTAGAAGGCCTAGCATCGGCTCTAACGTTGTTTCCAAGGCCGTCTAATAAAATGACAGCACAAGAATACTATGATGGAGAAAGGCATTGCATTCTTATAACAGCTAGAGATCCTATTCCTAAGAGAATGCTAGTCTCGGTGCCTGAGATTCAAGGAAGATTTATTGGCACAAAATTACATACTTTAAAGGCAGATTTTTACGAAGTGGCTAAAATGTTTGGTTCGCTAGCAGTATCCCTTTCAATAATTTCACCAATCCAACATCCAATTTTTGGAGTGATATTCAATATGGGGAATAATGATTCTTCACTAGCCAACACTCCCATCTCTGATTGCAGAAACGAACAATTTATTGTGTTATTATCAAGAAATTTTAGGGAGGCACATTATGCCCTTCATGAGAAAAGAACAATGGATCCACCCACAAAAGAAAGTGTAGAATCACTTAAGACAACAAATGATATTATACTTGCCATAGATTTTGCTGACGACCATGAAGAAGATCTATTCTCAATTATGATGACTGGGAAGCAAATCATTGAAGCTGACAAAGATGACCGACTTGTACATGATCCTATAAGCCTACTGCCCCTATCTGTCCCGAATGCCTCAACCGGTGAAGTTGGCATTTCAACTCTACCAATGGTAATATCCACAACACCAACTTTCATAGTTGGAGAAGGGTCTTTGAAAGGTGTAGTTGGAGGCAACTCGGGAAACTGCTCAACAAGCACAGCAATTGCTGTAGGCATGGCTGATCCAAGGGATGCTCCACCAGCTCAAAATTCCATGCTCCCTCATTCAATTGGAAATACATTCGATGTTCAACCATACTCATCACTATCAATGCTTCCTTATGCTAGTTCTAGTAGCAGAAGTCGCCCATATCTTCCATTCCAGGTGATTGGGTTTGGTCCACTTGGTAGAATTGCTTTTGGAACAAGCACCGGGGTTCCTCCTGCACCAATAACACCTCAATTTAATCCTTATGATTTTTGGCCTCCCCCATCATCTCTTACAAATTTTAATGACTATTTGCTGGAATGGGAGGGATCTTTGGCTGGAAAAATTGTCAAGAAGAATCGTCAATTACATCTTTGGGTAAAGGTTCTGAGGAAAGCAACATCGCCCTTGACGCTTACTATTGAGTGGCCAAGTAGGCTAGAGATAGCCCTATATTTACCACAGAAAGCTGTTAATCATACAGTAAAGATTTGTCGTGGTCCCGTTGATTACGTGTTCTTGTATTTAAAGCAATTTGACAATCTCGACTTGCATGACCATCTGAACAACAAGAACCTGAGTGCGAAAATTCATCTCCCTTCTCAAATTTTGATGTTAACTCCAACCAAAAGTAAACACCACTTCATAGGAATAGTCTTCCCTGGGGATACCATATTTATTGAACTTCTCTAAGTATGCATACGACTATCAAGAGTATCAAGAGAAGCCAAAAGAACAAGTTGGAGGACCTGTTGTGGCAGCTAGAATTGCATTAAGAGAAGAGACCACCATGAGATCATGCTCCCAAACTTTTCGAAGGGTGAAGTTGGGATAATTAAAAGTATATCATCAATGATATGGCAGCTAGATATTTCTTTAAGAATTGAACATGACTTTATCTTTTATTGTTTGAGTTTGTTAAATATATATATAAAGGCCAAATAGTCAATGAGTGACACCTGTAATTTAGTAGCAACTTAGTCACTTGCTGATAGCTTTATCTTTTATTAGTTTTTCTGTTTTAAATCTTCCCATTCTATAAATGTAAACGTTATTGATCAATAAATTATTAAAACTCCCTTTTCCT
Coding sequences of Glyma20g03988
>Glyma20g03988.1   sequence type=CDS   gene model=Glyma20g03988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACCAAGAAGTGGTTAAACTTAATCATAGATGGCAACTCGACCTTGGGTCCTTATTGGCCAAAAATTGTTTCAGAATATCTCGAAAAGATTGTTAGGACCTTCATTGACAACTCAAGAGAAGAGGGAGCTAATCATCATTGTGAGGTGGGTCTGGTTATGTATAATGACAACTCCGACCTAGGGTCGAACGTCCAATATATCCATTGGACAAGAGATGTGGATTATTTTTTAGGTATCCTATCATGTTTAGTTTTCAAAGGGGATAGTTTAAATCAAAATACCATGGTAGAAGGCCTAGCATCGGCTCTAACGTTGTTTCCAAGGCCGTCTAATAAAATGACAGCACAAGAATACTATGATGGAGAAAGGCATTGCATTCTTATAACAGCTAGAGATCCTATTCCTAAGAGAATGCTAGTCTCGGTGCCTGAGATTCAAGGAAGATTTATTGGCACAAAATTACATACTTTAAAGGCAGATTTTTACGAAGTGGCTAAAATGTTTGGTTCGCTAGCAGTATCCCTTTCAATAATTTCACCAATCCAACATCCAATTTTTGGAGTGATATTCAATATGGGGAATAATGATTCTTCACTAGCCAACACTCCCATCTCTGATTGCAGAAACGAACAATTTATTGTGTTATTATCAAGAAATTTTAGGGAGGCACATTATGCCCTTCATGAGAAAAGAACAATGGATCCACCCACAAAAGAAAGTGTAGAATCACTTAAGACAACAAATGATATTATACTTGCCATAGATTTTGCTGACGACCATGAAGAAGATCTATTCTCAATTATGATGACTGGGAAGCAAATCATTGAAGCTGACAAAGATGACCGACTTGTACATGATCCTATAAGCCTACTGCCCCTATCTGTCCCGAATGCCTCAACCGGTGAAGTTGGCATTTCAACTCTACCAATGGTAATATCCACAACACCAACTTTCATAGTTGGAGAAGGGTCTTTGAAAGGTGTAGTTGGAGGCAACTCGGGAAACTGCTCAACAAGCACAGCAATTGCTGTAGGCATGGCTGATCCAAGGGATGCTCCACCAGCTCAAAATTCCATGCTCCCTCATTCAATTGGAAATACATTCGATGTTCAACCATACTCATCACTATCAATGCTTCCTTATGCTAGTTCTAGTAGCAGAAGTCGCCCATATCTTCCATTCCAGGTGATTGGGTTTGGTCCACTTGGTAGAATTGCTTTTGGAACAAGCACCGGGGTTCCTCCTGCACCAATAACACCTCAATTTAATCCTTATGATTTTTGGCCTCCCCCATCATCTCTTACAAATTTTAATGACTATTTGCTGGAATGGGAGGGATCTTTGGCTGGAAAAATTGTCAAGAAGAATCGTCAATTACATCTTTGGGTAAAGGTTCTGAGGAAAGCAACATCGCCCTTGACGCTTACTATTGAGTGGCCAAGTAGGCTAGAGATAGCCCTATATTTACCACAGAAAGCTGTTAATCATACAGTAAAGATTTGTCGTGGTCCCGTTGATTACGTGTTCTTGTATTTAAAGCAATTTGACAATCTCGACTTGCATGACCATCTGAACAACAAGAACCTGAGTGCGAAAATTCATCTCCCTTCTCAAATTTTGATGTTAACTCCAACCAAAAGTAAACACCACTTCATAGGAATAGTCTTCCCTGGGGATACCATATTTATTGAACTTCTCTAA

>Glyma20g03988.2   sequence type=CDS   gene model=Glyma20g03988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAATGACAACTCCGACCTAGGGTCGAACGTCCAATATATCCATTGGACAAGAGATGTGGATTATTTTTTAGGTATCCTATCATGTTTAGTTTTCAAAGGGGATAGTTTAAATCAAAATACCATGGTAGAAGGCCTAGCATCGGCTCTAACGTTGTTTCCAAGGCCGTCTAATAAAATGACAGCACAAGAATACTATGATGGAGAAAGGCATTGCATTCTTATAACAGCTAGAGATCCTATTCCTAAGAGAATGCTAGTCTCGGTGCCTGAGATTCAAGGAAGATTTATTGGCACAAAATTACATACTTTAAAGGCAGATTTTTACGAAGTGGCTAAAATGTTTGGTTCGCTAGCAGTATCCCTTTCAATAATTTCACCAATCCAACATCCAATTTTTGGAGTGATATTCAATATGGGGAATAATGATTCTTCACTAGCCAACACTCCCATCTCTGATTGCAGAAACGAACAATTTATTGTGTTATTATCAAGAAATTTTAGGGAGGCACATTATGCCCTTCATGAGAAAAGAACAATGGATCCACCCACAAAAGAAAGTGTAGAATCACTTAAGACAACAAATGATATTATACTTGCCATAGATTTTGCTGACGACCATGAAGAAGATCTATTCTCAATTATGATGACTGGGAAGCAAATCATTGAAGCTGACAAAGATGACCGACTTGTACATGATCCTATAAGCCTACTGCCCCTATCTGTCCCGAATGCCTCAACCGGTGAAGTTGGCATTTCAACTCTACCAATGGTAATATCCACAACACCAACTTTCATAGTTGGAGAAGGGTCTTTGAAAGGTGTAGTTGGAGGCAACTCGGGAAACTGCTCAACAAGCACAGCAATTGCTGTAGGCATGGCTGATCCAAGGGATGCTCCACCAGCTCAAAATTCCATGCTCCCTCATTCAATTGGAAATACATTCGATGTTCAACCATACTCATCACTATCAATGCTTCCTTATGCTAGTTCTAGTAGCAGAAGTCGCCCATATCTTCCATTCCAGGTGATTGGGTTTGGTCCACTTGGTAGAATTGCTTTTGGAACAAGCACCGGGGTTCCTCCTGCACCAATAACACCTCAATTTAATCCTTATGATTTTTGGCCTCCCCCATCATCTCTTACAAATTTTAATGACTATTTGCTGGAATGGGAGGGATCTTTGGCTGGAAAAATTGTCAAGAAGAATCGTCAATTACATCTTTGGGTAAAGGTTCTGAGGAAAGCAACATCGCCCTTGACGCTTACTATTGAGTGGCCAAGTAGGCTAGAGATAGCCCTATATTTACCACAGAAAGCTGTTAATCATACAGTAAAGATTTGTCGTGGTCCCGTTGATTACGTGTTCTTGTATTTAAAGCAATTTGACAATCTCGACTTGCATGACCATCTGAACAACAAGAACCTGAGTGCGAAAATTCATCTCCCTTCTCAAATTTTGATGTTAACTCCAACCAAAAGTAAACACCACTTCATAGGAATAGTCTTCCCTGGGGATACCATATTTATTGAACTTCTCTAA
Predicted protein sequences of Glyma20g03988
>Glyma20g03988.1   sequence type=predicted peptide   gene model=Glyma20g03988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKKWLNLIIDGNSTLGPYWPKIVSEYLEKIVRTFIDNSREEGANHHCEVGLVMYNDNSDLGSNVQYIHWTRDVDYFLGILSCLVFKGDSLNQNTMVEGLASALTLFPRPSNKMTAQEYYDGERHCILITARDPIPKRMLVSVPEIQGRFIGTKLHTLKADFYEVAKMFGSLAVSLSIISPIQHPIFGVIFNMGNNDSSLANTPISDCRNEQFIVLLSRNFREAHYALHEKRTMDPPTKESVESLKTTNDIILAIDFADDHEEDLFSIMMTGKQIIEADKDDRLVHDPISLLPLSVPNASTGEVGISTLPMVISTTPTFIVGEGSLKGVVGGNSGNCSTSTAIAVGMADPRDAPPAQNSMLPHSIGNTFDVQPYSSLSMLPYASSSSRSRPYLPFQVIGFGPLGRIAFGTSTGVPPAPITPQFNPYDFWPPPSSLTNFNDYLLEWEGSLAGKIVKKNRQLHLWVKVLRKATSPLTLTIEWPSRLEIALYLPQKAVNHTVKICRGPVDYVFLYLKQFDNLDLHDHLNNKNLSAKIHLPSQILMLTPTKSKHHFIGIVFPGDTIFIELL*

>Glyma20g03988.2   sequence type=predicted peptide   gene model=Glyma20g03988   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYNDNSDLGSNVQYIHWTRDVDYFLGILSCLVFKGDSLNQNTMVEGLASALTLFPRPSNKMTAQEYYDGERHCILITARDPIPKRMLVSVPEIQGRFIGTKLHTLKADFYEVAKMFGSLAVSLSIISPIQHPIFGVIFNMGNNDSSLANTPISDCRNEQFIVLLSRNFREAHYALHEKRTMDPPTKESVESLKTTNDIILAIDFADDHEEDLFSIMMTGKQIIEADKDDRLVHDPISLLPLSVPNASTGEVGISTLPMVISTTPTFIVGEGSLKGVVGGNSGNCSTSTAIAVGMADPRDAPPAQNSMLPHSIGNTFDVQPYSSLSMLPYASSSSRSRPYLPFQVIGFGPLGRIAFGTSTGVPPAPITPQFNPYDFWPPPSSLTNFNDYLLEWEGSLAGKIVKKNRQLHLWVKVLRKATSPLTLTIEWPSRLEIALYLPQKAVNHTVKICRGPVDYVFLYLKQFDNLDLHDHLNNKNLSAKIHLPSQILMLTPTKSKHHFIGIVFPGDTIFIELL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo