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Report for Sequence Feature Glyma19g41210

Feature Type:gene_model
Chromosome:Gm19
Start:47511095
stop:47520052
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g41210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09570AT Annotation by Michelle Graham. TAIR10: phytochrome A | chr1:3095498-3099216 REVERSE LENGTH=1122 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009584GO-bp Annotation by Michelle Graham. GO Biological Process: detection of visible light SoyBaseN/AISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009638GO-bp Annotation by Michelle Graham. GO Biological Process: phototropism SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0010161GO-bp Annotation by Michelle Graham. GO Biological Process: red light signaling pathway SoyBaseN/AISS
GO:0010201GO-bp Annotation by Michelle Graham. GO Biological Process: response to continuous far red light stimulus by the high-irradiance response system SoyBaseN/AISS
GO:0010203GO-bp Annotation by Michelle Graham. GO Biological Process: response to very low fluence red light stimulus SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0017006GO-bp Annotation by Michelle Graham. GO Biological Process: protein-tetrapyrrole linkage SoyBaseN/AISS
GO:0017148GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of translation SoyBaseN/AISS
GO:0018106GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation SoyBaseN/AISS
GO:0018298GO-bp Annotation by Michelle Graham. GO Biological Process: protein-chromophore linkage SoyBaseN/AISS
GO:0046685GO-bp Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016604GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear body SoyBaseN/AISS
GO:0000155GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity SoyBaseN/AISS
GO:0004673GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008020GO-mf Annotation by Michelle Graham. GO Molecular Function: G-protein coupled photoreceptor activity SoyBaseN/AISS
GO:0009881GO-mf Annotation by Michelle Graham. GO Molecular Function: photoreceptor activity SoyBaseN/AISS
GO:0009883GO-mf Annotation by Michelle Graham. GO Molecular Function: red or far-red light photoreceptor activity SoyBaseN/AISS
GO:0031516GO-mf Annotation by Michelle Graham. GO Molecular Function: far-red light photoreceptor activity SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
PTHR24423Panther TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED JGI ISS
PTHR24423:SF40Panther JGI ISS
PF00360PFAM Phytochrome region JGI ISS
PF00512PFAM His Kinase A (phosphoacceptor) domain JGI ISS
PF00989PFAM PAS fold JGI ISS
PF01590PFAM GAF domain JGI ISS
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI ISS
PF08446PFAM PAS fold JGI ISS
UniRef100_C1PHB8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome n=1 Tax=Glycine max RepID=C1PHB8_SOYBN SoyBaseE_val: 0ISS
UniRef100_C1PHB8UniRef Annotation by Michelle Graham. Best UniRef hit: Phytochrome n=1 Tax=Glycine max RepID=C1PHB8_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma19g41210
LocusGene SymbolProtein Name
E3 PHYA3 Phytochrome A gene 3
E3 PhyA2 Phytochrome A2
E3 FT3 Flowering Time gene 3

Expression Patterns of Glyma19g41210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g41210
ParalogEvidenceComments
Glyma03g38620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g41210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g224200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g41210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g41210
>Glyma19g41210.1   sequence type=CDS   gene model=Glyma19g41210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCTTCAAGGCCCAGCCAATCATCCAGCAATAATTCTGGCAGATCTAGAACATCAAGACTCAGTGCTAGGAGGATGGCTCAGACAACTTTAGATGCAAAACTGCATGCAACTTTTGAGGAATCAGGTAGTTCTTTTGACTACTCCAGTTCAGTGAGAATGTCTCCTGCTGGTACTGTCAGTGGAGACCATCAACCAAGGTCTGATAGAGCAACAAGTTCTTACCTCCATCAGACACAGAAAATCAAGCTTATCCAGCCATTTGGGTGTTTGTTAGCTTTAGATGAGAAAACATGCAAGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCCAGTGTAGGTGACCACCCTGCTCTTGGCATTGGCACTGACATAAGAACTATTTTCACTGCCCCAAGTTCTGCTGCTATTCAGAAGGCACTGAGATTTGGGGATGTTTCACTTCATAACCCCATTCTAGTCCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGTAGTGTGATCATCGATTTTGAGCCGGTCAAGCCTCATGAAGTTCCCATGACTGCATCAGGAGCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAATAACTAGATTGGAATCCTTGACTACTGGGAACATGGAAACACTATGTAACACAATGGTTCGAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTCCATGAGGATGATCATGGGGAAGTGATTGCTGAGGTTAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCTCAGGCGACACGCTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTTGTGCAAAGCATGTGAATGTGCTTCAAGACAAAAAAATTCCATTTGATTTAACCTTGTGTGGATCAACCTTGAGAGCTGCTCATAGTTGCCACTTGCAATACATGGAGAACATGAATTCTAGTGCTTCCTTGGTTATGGCAGTTGTGGTAAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAACCACAGAAGAGTAAGAGACTCTGGGGTTTAGTAGTTTGCCATCACACTACTCCCAGATTCGTTCCTTTCCCTCTTAGGTATGCTTGTCAATTTCTGGCTCAAGTATTTGCGGTTCATGTGAGCAAAGAGCTAGAGATAGAGTATCAGATTATTGAGAAGAACATCCTGCAAACTCAAACACTCTTGTGTGATATGCTGGTGCAAGGTGAGCCCCTAGGCATTGTTTCACAAAGTCCTAATATAATGGATCTTGTGAAGTGTGATGGAGCAGCCCTGCTATATAAAAACAAGGTGTGGCGATTAGGGGTAACACCAAGTGAATCTCAGATAAAAGAGATAGCTTTGTGGCTCTTTGAGTGCCATGAGGATTCCACAGGTTTTTGTACAGATAGCTTGTCTGATGCAGGCTTCCCTGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGGCAGCTGCCAGAATAGCTTCCAAAGATATACTTTTCTGGTTTCGGTCTCACACAGCCTCAGAAATCCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGGAGGGTGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCCTGGAAGACCTATGAAACGGATGCCATTCATTCGTTGCAGTTAATACTGAGAGATGCATTCAAAGAGACACAGAGCATGGAGATAAGCACATATGCTATCGATACAAGGCTAGGTGATTTGAAGATTGAAGGAATGCAAGAACTGGATGCAGTGACAAGTGAGGTGGTAAGGTTAATTGAAACAGCAACGGTGCCAATTTTGGCGGTTGATGTTAATGGGATGATCAATGGATGGAACACAAAAATTGCTGAGTTGACAGGTCTTCCAGTTGATGAAGCTATTGGAAAGCATTTACTCACACTTGTAGAGGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCATTGCAGGGTGAGGAAGAGAGAAATGTCCAATTTGAGATCCAAACACATCATATGAAGATTGATTCTGGTCCCATCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGAGTTTGTTTTCTGGCACAAGATATAACTGCTCAGAAAACAATGATGGACAAATTCACCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGTTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACTGGATGGAAGCGAGAGGAGGTAATGGATAAAATGCTTTTAGGAGAGGTTTTCGGGACCCAAATAGCTTGTTGTCGCCTAAGGAATCATGAAGCTGTTGTTAACTTTAGCATTGTACTTAATACAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTTTTGGTTTCTTTGCTCGTGATGGAAAGCATGTAGAATGTATTCTTTCTATGACTAAGAAATTGGATGCAGAAGGTGTAGTTACTGGTGTCTTCTGCTTCTTGCAACTAGCAAGTGCAGAGCTGCAACAAGCATTACACATTCAGCGCATATCTGAACAAACTTCATTGAAAAGACTGAAAGATTTAACTTATTTGAAAAGGCAAATCCAGAATCCTTTATATGGGATTATGTTCTCCCGGAAATTGTTAGAGGGTACTGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAACGGGCATTCGGTGTCAACGCCAGATTAGCAAAATTCTGGATGACTCGGATCTTGACAGCATCATTGATGGCTACATGGATTTGGAGATGGTTGAATTCACTTTGCATGAAGTTTTGGTTGCCTCCCTAAGTCAAGTCATGACAAAGAGTAATGCAAAAGGTATCCGAGTAGTCAATGATGTTGAAGAGAAGATCACAACAGAGACCTTATATGGTGATAGTATCAGGCTTCAGCAGGTCTTAGCTGACTTTTTATTGATTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTAGCAGCCACGCTAACCCAACAGCAGTTAGGGAAATTAGTTCATCTTGCTAATTTGGAGTTCAGCATAACGCATGATAGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGCGATGGACATGAATCTGAGGAGGGTATTAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTCATGAATGGAGACGTACGTTATTTAAGGGAAGCAGGCAAATCATCTTTCATCCTATCTGTTGAACTTGCCGCAGCACATAAATCCAACACTTAA
Predicted protein sequences of Glyma19g41210
>Glyma19g41210.1   sequence type=predicted peptide   gene model=Glyma19g41210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSRPSQSSSNNSGRSRTSRLSARRMAQTTLDAKLHATFEESGSSFDYSSSVRMSPAGTVSGDHQPRSDRATSSYLHQTQKIKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSSAAIQKALRFGDVSLHNPILVHCKTSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTASGALQSYKLAAKAITRLESLTTGNMETLCNTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCCAKHVNVLQDKKIPFDLTLCGSTLRAAHSCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKSKRLWGLVVCHHTTPRFVPFPLRYACQFLAQVFAVHVSKELEIEYQIIEKNILQTQTLLCDMLVQGEPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIKEIALWLFECHEDSTGFCTDSLSDAGFPGAAALGDIACGMAAARIASKDILFWFRSHTASEIRWGGAKHEPGERDDGRRVHPRSSFKAFLEVVKTRSLPWKTYETDAIHSLQLILRDAFKETQSMEISTYAIDTRLGDLKIEGMQELDAVTSEVVRLIETATVPILAVDVNGMINGWNTKIAELTGLPVDEAIGKHLLTLVEDFSVDRVKKMLDMALQGEEERNVQFEIQTHHMKIDSGPISLVVNACASRDLQDNVVGVCFLAQDITAQKTMMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEVFGTQIACCRLRNHEAVVNFSIVLNTAMAGLETEKVPFGFFARDGKHVECILSMTKKLDAEGVVTGVFCFLQLASAELQQALHIQRISEQTSLKRLKDLTYLKRQIQNPLYGIMFSRKLLEGTELGAEQKQFLQTGIRCQRQISKILDDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQVMTKSNAKGIRVVNDVEEKITTETLYGDSIRLQQVLADFLLISINFTPTGGQVVVAATLTQQQLGKLVHLANLEFSITHDSFGVPETLLNQMFGRDGHESEEGISMLISRKLLKLMNGDVRYLREAGKSSFILSVELAAAHKSNT*






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