Glyma19g40630 - SoyBase

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Report for Sequence Feature Glyma19g40630

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46987737
stop:	46995212
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47210	AT	Annotation by Michelle Graham. TAIR10: myb-like transcription factor family protein \| chr2:19379039-19382204 FORWARD LENGTH=441	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG2656	KOG	DNA methyltransferase 1-associated protein-1	JGI		ISS
PTHR12855	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12855:SF5	Panther	gb def: Hypothetical protein At2g47210	JGI		ISS
UniRef100_G7KTN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SWR1-complex protein n=1 Tax=Medicago truncatula RepID=G7KTN9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NBE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NBE9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g40630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40630

Paralog	Evidence	Comments
Glyma03g38020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g218500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g40630

Limit To All Plant Sequences

>Glyma19g40630.2   sequence type=transcript   gene model=Glyma19g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCATCGGCTATTCTAAATTTTAATATCCGCAGTAGAGAAAAGTGAGAGGGAAAACTGGAACAGGAAGAACGAACCTGTTTAATTCCCCCAAATCCGAAGTTGATCCTGAAACCCTAAATAGACCTTAACGTTGTGTCTATGATTGTGAATTATGGACGCGAAGGATATCCTGGGATTGCCCAAAAACTCATTCCCAACTCTCGAGAAGAAGTCTCGTCCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCACGCGAGGTGTATGCGCTTACGGGTGGATTGGCCCCTCTCATGCCTGCAACTGAAGCCTCTCAGTTGAAGAAAAAGCCTCCTCCTCTGGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTACCATTGGGTACGAGTCGTTAATGGTGTTCCTCCCACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCCGTTGATGTTATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAGACGGATCAACTATTTGACTTATGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCCTCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGGGATGTCGCAGCACATCCTATTGTTAAGGAAACATATAATTTTGCACAAGAAATGGAACGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAAAATAGCGGAAAAACGCCTACCTCCCAAGGTTGCTGAACAGTCTCAGTTGGTTGCTTCTAATGCTGGTGCAGAAGCTACAGAGAGGGCTGTCCCTGGTGAAACCATATCTCCATCAAATGTGCAAATTCCAATGGCTGTTCCAGATAATGCATCTACTCTAGCTTCTCTTCGTATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCGAACGCATCTGCTGGACTTCGGACTATCAAACGGGTTGAACAAACTTTGCAAGATCTTGGGGTCAATTTGAAGCCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAGCAGGTGCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGAACACCAAAGGACCGAACATTTGTTCCAGATTCAACGAATTTCGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGCAAGGCACCTGGAGCTCCATCAGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAGTTTCTCAGGTGGCAACCGGGAAAGGTGTTTCAATTCACAGAATTCTTTCAATCAAACTGAAATTTGGTTTACTTCGGTCTGCAATTTTAGATTAATGCCACTCTTGTTATTCGATGTAAAAAGAAAAGTGAGATCCCTGAGATGAGTGAGATCTGCCATCTTAACCATGCCCTGAGAAGCTGGACTTTATTTCTTGTGCTGTTAATGCTTTGTAGAATTGTAGGGAGACCAGGTACAAAAAAGGCATCTTATTTGAATATGCATGTATATAAGTTTGGACATGGGAATTCCAGATGCCTTTGACAGCTTATGTCGGGATGTAGAAATTGGGTGCGGATGGAACAAGTGTCCTGCTTCATAAATGTTTCTAATCGTTCACACACCCAATGAAAAAAAAAATGTTTTTATTCAACATGATCATTCAAACTAAACGAAGATAATATTATTCAAATTTGTCATTGTAGTAAATTTGTGGAATGGCACAGGAGCATAAGGAAGAA

Coding sequences of Glyma19g40630

Limit To All Plant Sequences

>Glyma19g40630.1   sequence type=CDS   gene model=Glyma19g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCGAAGGATATCCTGGGATTGCCCAAAAACTCATTCCCAACTCTCGAGAAGAAGTCTCGTCCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCACGCGAGGTGTATGCGCTTACGGGTGGATTGGCCCCTCTCATGCCTGCAACTGAAGCCTCTCAGTTGAAGAAAAAGCCTCCTCCTCTGGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTACCATTGGGTACGAGTCGTTAATGGTGTTCCTCCCACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCCGTTGATGTTATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAGACGGATCAACTATTTGACTTATGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCCTCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGGGATGTCGCAGCACATCCTATTGTTAAGGAAACATATAATTTTGCACAAGAAATGGAACGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAAAATAGCGGAAAAACGCCTACCTCCCAAGGTTGCTGAACAGTCTCAGTTGGTTGCTTCTAATGCTGGTGCAGAAGCTACAGAGAGGGCTGTCCCTGGTGAAACCATATCTCCATCAAATGTGCAAATTCCAATGGCTGTTCCAGATAATGCATCTACTCTAGCTTCTCTTCGTATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCGAACGCATCTGCTGGACTTCGGACTATCAAACGGGTTGAACAAACTTTGCAAGATCTTGGGGTCAATTTGAAGCCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAGCAGGTGCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGAACACCAAAGCATTTACATCGTGTTGGGGATCAGGACCGAACATTTGTTCCAGATTCAACGAATTTCGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGCAAGGCACCTGGAGCTCCATCAGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAG

>Glyma19g40630.2   sequence type=CDS   gene model=Glyma19g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCGAAGGATATCCTGGGATTGCCCAAAAACTCATTCCCAACTCTCGAGAAGAAGTCTCGTCCTCCCAAAGAGTCTCAAAGAAAACCAGATGGCATTTCACGCGAGGTGTATGCGCTTACGGGTGGATTGGCCCCTCTCATGCCTGCAACTGAAGCCTCTCAGTTGAAGAAAAAGCCTCCTCCTCTGGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGTTCTGCTCGTAAAGATAATCTTCATCTTTACCATTGGGTACGAGTCGTTAATGGTGTTCCTCCCACAGGGGACTATTCTTTTGCCAAGTATAACAAGTCCGTTGATGTTATCAAATACACAGATGAGGAGTATGACAAGTATTTGACAGATCCTATGTGGACCAAAGAGGAGACGGATCAACTATTTGACTTATGTGAGAGATTTGATCTCCGATTTATTGTAATAGCTGATAGGTTTCCATCCTCTCGGACTGTAGAGGAATTAAAGGATAGATATTATAGTGTTTCCCGGGCTATATTGATTGCTAGGGCTCCATCTTCTGGGGATGTCGCAGCACATCCTATTGTTAAGGAAACATATAATTTTGCACAAGAAATGGAACGAAAACGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGAAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAAAATAGCGGAAAAACGCCTACCTCCCAAGGTTGCTGAACAGTCTCAGTTGGTTGCTTCTAATGCTGGTGCAGAAGCTACAGAGAGGGCTGTCCCTGGTGAAACCATATCTCCATCAAATGTGCAAATTCCAATGGCTGTTCCAGATAATGCATCTACTCTAGCTTCTCTTCGTATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCGAACGCATCTGCTGGACTTCGGACTATCAAACGGGTTGAACAAACTTTGCAAGATCTTGGGGTCAATTTGAAGCCAAGGGTTCCAACGAAAGCTGTTTGTGCAGAGCATCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAGCAGGTGCAATATAAAGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGAACACCAAAGGACCGAACATTTGTTCCAGATTCAACGAATTTCGGAGTGGAAAGGGTTGGCAAAAAGGACCAAAAGCGCAAGGCACCTGGAGCTCCATCAGCTCATAAAAGACCTAGAAAACTAAAGGCCTCAGATCTTTAG

Predicted protein sequences of Glyma19g40630

Limit To All Plant Sequences

>Glyma19g40630.1   sequence type=predicted peptide   gene model=Glyma19g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKDILGLPKNSFPTLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPATEASQLKKKPPPLEKITWQWLPFTSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDVIKYTDEEYDKYLTDPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDVAAHPIVKETYNFAQEMERKRALSMVLSQTRQQERRDEEVLVEAKKIAEKRLPPKVAEQSQLVASNAGAEATERAVPGETISPSNVQIPMAVPDNASTLASLRMLRVYLRTYALEQMVQAANASAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLHRVGDQDRTFVPDSTNFGVERVGKKDQKRKAPGAPSAHKRPRKLKASDL*

>Glyma19g40630.2   sequence type=predicted peptide   gene model=Glyma19g40630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKDILGLPKNSFPTLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPATEASQLKKKPPPLEKITWQWLPFTSSARKDNLHLYHWVRVVNGVPPTGDYSFAKYNKSVDVIKYTDEEYDKYLTDPMWTKEETDQLFDLCERFDLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARAPSSGDVAAHPIVKETYNFAQEMERKRALSMVLSQTRQQERRDEEVLVEAKKIAEKRLPPKVAEQSQLVASNAGAEATERAVPGETISPSNVQIPMAVPDNASTLASLRMLRVYLRTYALEQMVQAANASAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFVPDSTNFGVERVGKKDQKRKAPGAPSAHKRPRKLKASDL*

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