Glyma19g40090 - SoyBase

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Report for Sequence Feature Glyma19g40090

Feature Type:	gene_model
Chromosome:	Gm19
Start:	46547961
stop:	46552836
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g40090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40940	AT	Annotation by Michelle Graham. TAIR10: ethylene response sensor 1 \| chr2:17084635-17086819 REVERSE LENGTH=613	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010105	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0018106	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0051740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ethylene binding	SoyBase	N/A	ISS
KOG0519	KOG	Sensory transduction histidine kinase	JGI		ISS
PTHR24423	Panther	TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED	JGI		ISS
PTHR24423:SF158	Panther		JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF01590	PFAM	GAF domain	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
UniRef100_I1NB93	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NB93_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZSQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene response sensor n=1 Tax=Vigna radiata RepID=Q9ZSQ0_VIGRA	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma19g40090

Locus	Gene Symbol	Protein Name
	ERS1	Ubiquitous, Histidine Kinase

Expression Patterns of Glyma19g40090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g40090

Paralog	Evidence	Comments
Glyma03g37470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g40090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g213300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g40090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g40090

Limit To All Plant Sequences

>Glyma19g40090.2   sequence type=transcript   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGTTAGATGATATTGGGCAGCAGGCGTCGGATTGGATAAAGAAAGAAGGCAAATGGGAATTTGGACCGGATACGCTGGATTTCACACCCATCTGTCAACACTCGAAGGAAAAGTTAACACACATTCATATAGTGTGGTCCAAATTCAAAGAAACTTCACAATGCCCATGGCCTAGAAAGTTGATTGATCACACAAACACCAAATCAGAATTCAGAATTCAGAATTCAGAACTCGCGGTTTACTAATATTATTCTTTTGAAATTTATTTTATACGTACCCAGAAAAAGTGAAGCTGAGTAGGCCCAGGCCACCGTCCAATGAATTCCCATTTCCCAGCCTCTAAACAGAAAACTTTTGGCAAATATTACCAAAAATGAGAAAATAAAATAAAAAGGTGCCAGCCAATCCGAAAATGATGTGGCACGTGTGTAAAGCGAAAAGTAAAATGAGAGAAGCATGGAAAAAAGGGCACGCCCGAGTGGGAGTAGGCGTTTGCCATGCTTGTCCGTGAGGGATGGGCTTAACGTTAATCTCATGTCATGCTTTTTAACCCACTCACACACTCTCTCTTCTTTCTTCATGCCCGCCTCCCTTTCTTCTTCCTTTGATCCGTTCATACGGTGGTTAGATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAATATCCAAGACACCAACATTGCATACCTTTCGATCACAGTCGACAAGATGGAGTACACATACTTTCATTTTGCATGTGCTAAATTGTATAATTTACAGTTTGCAGCTGTAGAATAGGAATACTATGTCAGGCATATTTCTAACAAACAAGTCTTATGTGAACTCCTGCCGTATTAACTAGAATACAATGCAATGAAACAAATTTGAGAGACAATCCGTTACTTAATTTGACTTGTAGTATATATTGTGTTAGTGCCTTGTTACTTTTTTTCCGGCTTTTTAATGAACCAATGTTTACTTATATTTCC

Coding sequences of Glyma19g40090

Limit To All Plant Sequences

>Glyma19g40090.1   sequence type=CDS   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

>Glyma19g40090.2   sequence type=CDS   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCTGTGATTGTATAGACACACAGTATCCTCCAGATGAACTTCTCGTAAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCCTATTTTTCTATTCCCGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCCCCACACTCTAAGGCTGTTGCTGTTGTCATGACGATTGCCAAAGTGTCGTGTGCTATTGTGTCATGTGCGACTGCTCTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGACGCGCGAATTATTCCTGAAGAACAAGGCTGAAGAGCTTGACAGGGAGATGGGACTTATTCTTACTCAAGAAGAGACTGGAAGGCATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACTATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCAAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTACCACGTGCAAGTTGGGTCTACAGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGTCCTCGAGCTATGCGGATACCACCAACCTGTCCACTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCGCCTGAAGTTGTTGCTGTTCGGGTGCCACTTCTAAATTTGTCCAATTTTCAAATCAACGATTGGCCCGATATGTCAGCAAAAAGCTATGCAATCATGGTTCTCATCCTCCCTACTGATAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTGGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGAGCCCGTGATCAACTCTTGGAGCAGAATGTCGCTTTAGATTTAGCTCGGCAAGAGGCAGAGATGGCAATTCATGCCCGCAACGATTTTCTTGCCGTCATGAATCATGAAATGAGGACGCCAATGCATGCAATTATAGCATTGTCATCCCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCGACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAAAGGGAAAATTCAACCTTCATGGTGTTTTGGGAGAGATCGTTGAACTGATAAAACCAATAGCATCTGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGACTTACACAAACTCTTTTGAATGTTGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTATAAGAGTATCGGTTGCAAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATACGAGTCCAGGTTAAGGACTCTGGATGTGGCATTCCCCCACAAGAAATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGTCCTGACAAAGGAAGCACAGCTACATTTATAATCAAACTTGAGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATACAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCAAAGATGAAGACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

Predicted protein sequences of Glyma19g40090

Limit To All Plant Sequences

>Glyma19g40090.1   sequence type=predicted peptide   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDMSAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLLEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEKGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGIPPQEIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPDKGSTATFIIKLEICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF*

>Glyma19g40090.2   sequence type=predicted peptide   gene model=Glyma19g40090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKAVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKTRELFLKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPRAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDMSAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLLEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEKGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSIRVSVAKPESLQDWRPPEFYPASSDGHFYIRVQVKDSGCGIPPQEIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPDKGSTATFIIKLEICGNPDPSDHQAANRSQAYSGSGGLARFKPFIKDEDDTGFSTRRNQRSF*

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