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Report for Sequence Feature Glyma19g35180

Feature Type:gene_model
Chromosome:Gm19
Start:42727418
stop:42732223
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33310AT Annotation by Michelle Graham. TAIR10: auxin-induced protein 13 | chr2:14114569-14115757 REVERSE LENGTH=247 SoyBaseE_val: 4.00E-51ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_D9ZIN3UniRef Annotation by Michelle Graham. Most informative UniRef hit: ARF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIN3_MALDO SoyBaseE_val: 3.00E-60ISS
UniRef100_I1N9V2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9V2_SOYBN SoyBaseE_val: 5.00E-154ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g32451 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g168500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g35180.6   sequence type=transcript   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGATAATGGACTTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAGATAATGTTTGCACCTTTACATGTTAGGATACACAAAACTTATGATCTAAAATGTACAACATGAGTTGAAGGAATATAAATGTGAGAAAAAACAGAAAGAGGGAAGTTAATTAATACTGTGAGTAACGGATTTTTATTTTTAAATGATCAAACCTCGCTTTTTTGTTTCTGGATTCAATTCAAATGGTGTTTGTTTAATTTCTCTTGGTATATCACTTGAAAGGCACAGGCCCCATAAATTTTCATGTAATGTTTGTCATATAAGGGATTGCTGTTTGTTAATAATGTAAATGTAAATATGAGATGTATGCTAGCTTTCTTATCAAATTTTGATTGCCTTCTCTTTCCCTGCTATTGTATTTCAAATTTTCAGTTGAAATAAGAGCTGTTTTCGGG

>Glyma19g35180.7   sequence type=transcript   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAGATAATGTTTGCACCTTTACATGTTAGGATACACAAAACTTATGATCTAAAATGTACAACATGAGTTGAAGGAATATAAATGTGAGAAAAAACAGAAAGAGGGAAGTTAATTAATACTGTGAGTAACGGATTTTTATTTTTAAATGATCAAACCTCGCTTTTTTGTTTCTGGATTCAATTCAAATGGTGTTTGTTTAATTTCTCTTGGTATATCACTTGAAAGGCACAGGCCCCATAAATTTTCATGTAATGTTTGTCATATAAGGGATTGCTGTTTGTTAATAATGTAAATGTAAATATGAGATGTATGCTAGCTTTCTTATCAAATTTTGATTGCCTTCTCTTTCCCTGCTATTGTATTTCAAATTTTCAGTTGAAATAAGAGCTGTTTTCGGGAACCATTGCTT

>Glyma19g35180.8   sequence type=transcript   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGGACTCTATATGAATAATTGATGGTGCCAGAAATTAGCTGCAAGATATAAGACTTAAATATATAACTATTTGGTACTGATTGCACGGCCTATTCGAATATCATAACACTCAAGCCACCATTCAGTGCACTATCCAGCATATCATTTACTAGAGTTCACCACGTCATGGCCTTTTTTTGGAACAAGGGCAATGGTGTGAGCAATTGTAACTAGAACAAATCTTGAGATTTGAGAATTGCAATTGATTTATTGAGGCGTAGGACCTCTTGTTTTATCTAGTTTGATATTTTTCTACCTTTGTCCTTAAAATTGCAATCAGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGATAATGGACTTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAGATAATGTTTGCACCTTTACATGTTAGGATACACAAAACTTATGATCTAAAATGTACAACATGAGTTGAAGGAATATAAATGTGAGAAAAAACAGAAAGAGGGAAGTTAATTAATACTGTGAGTAACGGATTTTTATTTTTAAATGATCAAACCTCGCTTTTTTGTTTCTGGATTCAATTCAAATGGTGTTTGTTTAATTTCTCTTGGTATATCACTTGAAAGGCACAGGCCCCATAAATTTTCATGTAATGTTTGTCATATAAGGGATTGCTGTTTGTTAATAATGTAAATGTAAATATGAGATGTATGCTAGCTTTCTTATCAAATTTTGATTGCCTTCTCTTTCCCTGCTATTGTATTTCAAATTTTCAGTTGAAATAAGAGCTGTTTTCGGG

>Glyma19g35180.5   sequence type=CDS   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGATAATGGACTTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAGATAA

>Glyma19g35180.6   sequence type=CDS   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGATAATGGACTTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAGATAA

>Glyma19g35180.7   sequence type=CDS   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAATACAAGCTCATATAG

>Glyma19g35180.8   sequence type=CDS   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCATATTGTACATTCCACGTGTAAATGATGGGCTCCACAGGGATGGCGGTCTCCTGGGGCGTGGACAAAGGCGAGTTCCAATTTCCATTAGATTGGATTGGAGGGATAAACAAAGCAAACACGTGGGCCACTCGGCAATGAGTCTCAAGTCTAAAGAGTCTTGTTCACCACGCCACTCTTCTTCTTGTTGTAGATATTCCCTCACTTCACAACTTGAGACAAGAGCAGAGAAGCCGCTTCAATGTCTAAAGATGACAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACAGAAGTATTCAATTCTACACTTGACAAAAGAGCAAGCAATAGTGCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGACTTCCCTGTTTGTGAAAGTAAAAATGGACGGGATACCAATCGGAAGGAAGGTTGATTTGGGTGCTCACGATTCTTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACAAAGGATCAAATGGAGAAGATCATGGTACTGAAGTTGGAACAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGGTGCTTGTTGGAGATGTTCCTTGGTGGACTCTATATGAATAA

>Glyma19g35180.5   sequence type=predicted peptide   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILYIPRVNDGLHRDGGLLGRGQRRVPISIRLDWRDKQSKHVGHSAMSLKSKESCSPRHSSSCCRYSLTSQLETRAEKPLQCLKMTTLLLRILHLTLNFLSPYAPANSSFTSLPITAPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTLDKRASNSAGVRKSADGGSDSSNIISKEKGNLRTSLFVKVKMDGIPIGRKVDLGAHDSYETLAQTLEDMFDESTTVLTHKVGSNGEDHGTEVGTDGHSKLLDGSSDFVLTYEDKEGDWVLVGDVPWWMFLNSVRRLRIMRTPEDNGLAPRLEEKNRRSNTSSYR*

>Glyma19g35180.6   sequence type=predicted peptide   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILYIPRVNDGLHRDGGLLGRGQRRVPISIRLDWRDKQSKHVGHSAMSLKSKESCSPRHSSSCCRYSLTSQLETRAEKPLQCLKMTTLLLRILHLTLNFLSPYAPANSSFTSLPITAPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTLDKRASNSAGVRKSADGGSDSSNIISKEKGNLRTSLFVKVKMDGIPIGRKVDLGAHDSYETLAQTLEDMFDESTTVLTHKGSNGEDHGTEVGTDGHSKLLDGSSDFVLTYEDKEGDWVLVGDVPWWMFLNSVRRLRIMRTPEDNGLAPRLEEKNRRSNTSSYR*

>Glyma19g35180.7   sequence type=predicted peptide   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILYIPRVNDGLHRDGGLLGRGQRRVPISIRLDWRDKQSKHVGHSAMSLKSKESCSPRHSSSCCRYSLTSQLETRAEKPLQCLKMTTLLLRILHLTLNFLSPYAPANSSFTSLPITAPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTLDKRASNSAGVRKSADGGSDSSNIISKEKGNLRTSLFVKVKMDGIPIGRKVDLGAHDSYETLAQTLEDMFDESTTVLTHKVGSNGEDHGTEVGTDGHSKLLDGSSDFVLTYEDKEGDWVLVGDVPWCSKIGRKEQKIEYKLI*

>Glyma19g35180.8   sequence type=predicted peptide   gene model=Glyma19g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSILYIPRVNDGLHRDGGLLGRGQRRVPISIRLDWRDKQSKHVGHSAMSLKSKESCSPRHSSSCCRYSLTSQLETRAEKPLQCLKMTTLLLRILHLTLNFLSPYAPANSSFTSLPITAPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSTLDKRASNSAGVRKSADGGSDSSNIISKEKGNLRTSLFVKVKMDGIPIGRKVDLGAHDSYETLAQTLEDMFDESTTVLTHKGSNGEDHGTEVGTDGHSKLLDGSSDFVLTYEDKEGDWVLVGDVPWWTLYE*







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