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Report for Sequence Feature Glyma19g34550

Feature Type:gene_model
Chromosome:Gm19
Start:42144502
stop:42144657
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58170AT Annotation by Michelle Graham. TAIR10: BET1P/SFT1P-like protein 14A | chr3:21542632-21543775 REVERSE LENGTH=122 SoyBaseE_val: 3.00E-18ISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005484GO-mf Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
PTHR12791Panther GOLGI SNARE BET1-RELATED JGI ISS
PTHR12791:SF5Panther BET1-LIKE SNARE 1 JGI ISS
UniRef100_D5FGC6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like snare 1-1 n=1 Tax=Malus x domestica RepID=D5FGC6_MALDO SoyBaseE_val: 5.00E-19ISS
UniRef100_UPI000233F2C7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F2C7 related cluster n=1 Tax=unknown RepID=UPI000233F2C7 SoyBaseE_val: 3.00E-28ISS

Expression Patterns of Glyma19g34550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34550
ParalogEvidenceComments
Glyma03g31790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g34550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g34550
>Glyma19g34550.1   sequence type=CDS   gene model=Glyma19g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGACAATCGTAACAATAGAGTTTCCCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCATCTGTTTACTCCTCTTCTCATGAAATTGATGAACACGATAATGAGCAGGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTGAAAAGA
Predicted protein sequences of Glyma19g34550
>Glyma19g34550.1   sequence type=predicted peptide   gene model=Glyma19g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RDNRNNRVSLFDGIEEGGIRASSVYSSSHEIDEHDNEQALDGLQDRVNLLKR






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