Glyma19g31720 - SoyBase

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Report for Sequence Feature Glyma19g31720

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39516972
stop:	39529124
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57300	AT	Annotation by Michelle Graham. TAIR10: INO80 ortholog \| chr3:21199612-21207635 FORWARD LENGTH=1507	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007267	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell-cell signaling	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0016444	GO-bp	Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0045739	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of DNA repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016817	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides	SoyBase	N/A	ISS
KOG0388	KOG	SNF2 family DNA-dependent ATPase	JGI		ISS
PTHR10799	Panther	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	JGI		ISS
PTHR10799:SF213	Panther	DNA HELICASE INO80-RELATED	JGI		ISS
PF00176	PFAM	SNF2 family N-terminal domain	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_G7KSM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=1 Tax=Medicago truncatula RepID=G7KSM2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E8CB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E8CB related cluster n=1 Tax=unknown RepID=UPI000233E8CB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31720

Paralog	Evidence	Comments
Glyma03g28960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g136000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31720

Limit To All Plant Sequences

>Glyma19g31720.1   sequence type=CDS   gene model=Glyma19g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCACAGGCCGAAATCCAAGGACTCACTCTCTTACTCCACTCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCAAAACAAGATGATGATTTTGATTATTACGGGAATAGTAGTCAGGATGAGAGCAGAGACAGCGAAGGTGGGGGGATTACAAATCACGGTAATGGGAATGTGCATGAAAAGGAAGTGAATTTGTTCAAGAAGAGGAGATGGTCTCTAAACAGTGACAACGAGGAGAAGACCAGTTTTTACGGGGCACACATGACGGAGGAGCGATATCGATCGATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGGTACCTTGAGTAGTCCCGCCCAAAATCAGGCTGCTGCTCCACTTGTGAAAAGCAACACGGGACTAAAAGCTCGCAAGTCAGGGAATGAGCACAGGGGAGGAGGATTACATGTGGCGGAGAGTACATCGGAATGGATGAATGATTCCAGTTCTCAGAAACCTGGAAACTACCGCGATGCAGATTTCTCACCACAATATGGCACTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAAGATTCCTCCGGTCTATGATAAGTTGGCTGGAGCTCTGAACCTCCCAAGCTTCTCGGATATCCATGTTGAGGATTTTTACTTAAAGGGTACTTTGGATTTGGGCTCCTTAGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGAGAAGCAATACCACAATTTGAATCACTGCAGGCACGACTGAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGTCTGAAAATGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCGGGAAGTATAAGGCGATCTATTTTGTCTGAGGGTGGAGTATTGCAGGTATATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATCGAGAAGGAGGAAATGGAAAGATGTGGAAAAATTTGGGCAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTCACTATTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTCAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGACTGTCGGTATGCGCACCCGGAAACTAGCTAGAGACATGTTACTGTTCTGGAAACGAATAGACAAGGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCGAACTTACTATCTTCAGAAACTTTACCCAAGGAAGATGAAGATGCAGATGATCAAGATGCACTGGTTGACTCTTCAGATGTGATGCCCGATGAGGAGGTAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTCTAAGCAGAGAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACCCCCTCCACCATGCCAGTGGCATCCACTGTTCGGACACCTGAATTATTTAAAGGGGTTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCTGATGAGATGGGGCTTGGAAAGACCATTCAGGCCATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGAGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCTATCAAAAGTGCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAACGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTTACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGATGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATACAAAGTTCTGAAACTCTCAGCTCAGCTGTTGGTCCTGTTGTCTCCAGAGAATCTTTTCATAAACATTTTAATATTTTTAGACCCGAAAATGTTTATCGGTCTGTCTTCTCAGAAGATATGTACAGTAAAAGTGGAAATTTTGGTTTTACCCATATGATGGATTTGTCTCCACAAGAGGTGACATTTCTGGCTACTGGTTCTTTTATGGAGCGACTACTATTTTCTATGATGAGATGGGAACAAAAATTCATTGATGAAGCTGTAGACTTTCTAACGGAGACCATAGATGATGATCCGGAATGTAGTTACCTTGAGAAAGAAAAAGTGAGAGCAGTTACACGAATGTTATTGGTGCCATCGAGATCTGAGACCCTGGTTCTTCAAAAAAAATTGCAAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGGTCGTCCCCCATCAAGATAGGGTGTTATCAAATGCCAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCGATTGGTGCTCACTGCTCAGATAGAAACTTCTGCTATAAAATGATTGAAGAATTACATGATCCCTGGATTAAGAGGTTGCTTGTGGGGTTTGCACGTACATCTGATAATAATGGGCCTAGAAAGCCAGATAGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTGAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGGAATTTTGACCCTGCGAAATTGCTCACTGACTCGGGAAAGCTCCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGCGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGAGATCTTTTAGCTCCTGAGGATGTTGTATCATTGCTTCTAGATGATGTTCAATTGGAACAGAAATTAAAGGAAATCCCTCTTCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGGGGTATTCGGGTAAATGAAGACGGTGATGCATCGATGGAAGATCTAACAAGCTCTGTAGCCCAGGGTACATCAGATAATGATCTTTCCATGGATCCAGAGGGTTCAAAGTCTAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCCAACTTCAAGGCCAAAGAACTCTCAAAAGATGAGTGAATTTAGTACTATGCCTATGGACGGTGAACTGGATGATCTTGATCCAGTGGGTCAGAAACCCAAGAGACCCAAGAGGATAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTTGGACTGCTAGCTTGGTCCCAGAGCAGTCCCAGTTTCCACCTCCACGAGATTTTAGTGTCGGGGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA

Predicted protein sequences of Glyma19g31720

Limit To All Plant Sequences

>Glyma19g31720.1   sequence type=predicted peptide   gene model=Glyma19g31720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDHRPKSKDSLSYSTLFNLEPLMNFQLPKQDDDFDYYGNSSQDESRDSEGGGITNHGNGNVHEKEVNLFKKRRWSLNSDNEEKTSFYGAHMTEERYRSMLGEHIQKYKRRFKGTLSSPAQNQAAAPLVKSNTGLKARKSGNEHRGGGLHVAESTSEWMNDSSSQKPGNYRDADFSPQYGTDRIMYEPASLDIGDGIIYKIPPVYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAIPQFESLQARLKVMSASNSAHKFSLKMSDVDLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKIWANIVRRDIPKHHRNFTIFHRKQLIDAKRVSETCQREVRMKVSRSLKWTRTVGMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKEDEDADDQDALVDSSDVMPDEEVDPEEAELKKEALKAAQEAVSKQRMLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSATSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGEMEDVYYSGGHNPISYEIPKLVYQEIIQSSETLSSAVGPVVSRESFHKHFNIFRPENVYRSVFSEDMYSKSGNFGFTHMMDLSPQEVTFLATGSFMERLLFSMMRWEQKFIDEAVDFLTETIDDDPECSYLEKEKVRAVTRMLLVPSRSETLVLQKKLQTGPSHAPFEALVVPHQDRVLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFCYKMIEELHDPWIKRLLVGFARTSDNNGPRKPDSPHHLIQEIDSELPVSQPALELTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASMEDLTSSVAQGTSDNDLSMDPEGSKSSNKKRKAASDKPTSRPKNSQKMSEFSTMPMDGELDDLDPVGQKPKRPKRIKKNVNEKFEDAFTWTASLVPEQSQFPPPRDFSVGGSKAESGQDN*

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