Glyma19g05900 - SoyBase

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Report for Sequence Feature Glyma19g05900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6545125
stop:	6552884
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38640	AT	Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein \| chr5:15468020-15470674 REVERSE LENGTH=642	SoyBase	E_val: 0	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0045947	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of translational initiation	SoyBase	N/A	ISS
GO:0050790	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005851	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 2B complex	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0005085	GO-mf	Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1467	KOG	Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2)	JGI		ISS
PTHR10233	Panther	TRANSLATION INITIATION FACTOR EIF-2B	JGI		ISS
PTHR10233:SF14	Panther	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA	JGI		ISS
PF01008	PFAM	Initiation factor 2 subunit family	JGI		ISS
UniRef100_G7ZY49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor eIF-2B delta subunit n=1 Tax=Medicago truncatula RepID=G7ZY49_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E34C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E34C related cluster n=1 Tax=unknown RepID=UPI000233E34C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g05900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g05900

Paralog	Evidence	Comments
Glyma13g07460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g05900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g044300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05900

Limit To All Plant Sequences

>Glyma19g05900.1   sequence type=CDS   gene model=Glyma19g05900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCCTCACGCCGTGCCCCACGCGCCGTGATCGACCCTATACCGAAGATCCGCCAAGTGGGGTTCTTTGCCCCGCCCGAGCGCTCTCAGTCGGGTCCTCCCGACCCGACCCACTCCTCTCCCCCGATCTCCAGCTCCCTCTCCCCGGTCATGATCCCGCCCCCGCGCCACCTCTCCGACAACCTCCTTCTCCACGCCCCCCGCCCCGCCTCCTCCCCCCTCTCCGCCGCCGCTGCCGCCGGAGGAAGCGGAAACTCCTTTGACTACGGCGCGGTCTTCTTCCCCGCCCCGCTCTCTCCCGCGATACCGTCGTCTTCGTACTCCAGCAGAATCATCGCCACCACCGGCGAGGGAGGGTTCTTCAAGGGGAACGGCGCCGGCGGCGGAAAGGTGGCGGCGTCATCGTTCCCTCGCGGAGGATTCGACTTGACGGCGATGAAGAAGGCGGCGGCGGCGAGTGTTGTGGTGCCGGCGAGCGAGTTGACTACGGTTTCCGTGGTAAATGATTCGCTCGGGATTCCTGAAAAAGAAAAAGGAAATAAAGCAGGAGGGTCAGCAGTGGAAGTGAAAGACCAACCTAATAGTTCAAAGCAGCAGAAACCCAAACTCTCAAAAGCTGAAAGACGTGCACTCCAAGAATCTCAACGGGCTGCAAAGGCTGCTGCAAAAGGTGAAGGAAGTAAGGCATCTGGAACTGTGGCTACAATGAATGCAAAACCAGCTAAAGCTGTAAAGCCTGCACAGAAAGTTGATAATGCAGCAGTTGCAGCGTCTGAAAAGAAGGGAGGTGAGATTCCACCAGAAAAGGATAGAAAGAAAGATGCTCCTCAACCACGCATGCAGTATGACGACAAGAGTCGAGTGGAGAAAGCTAAACGTCGTGCAGTGGTGAAACAAACTGAAGCTAGGAATAGAGTTGAGTTGTTCAGGCATTTGCCACAATATGAGCATGGGAGTCAGCTTCCAGATCTCGAGGCAAAGTTTTTCCATCTTTCTCCAGTGCACCCTTCTGTTTATAAGGTGGGTTTGCAATATCTAACTGGAGATATAGCTGGTGGCAATGCTCGTTGTATTGCAATGCTTCAAGCATTCCAAGAGGCCATCAAAGACTACAAGGTTCCACATGAGAAGACTCTTGTGAGAGACTTGACAGCAAAAATTAGTAGTTATGTATCATTTCTTATTGAATGTCGGCCTCTGTCAATCAGCATGGGAAATGCAATTCGGTTTCTTAAAAGTCATATAGCCAAGCTACCTTTGACCTTGTCTGAATCAGAAGCAAAAGCTTCTCTCCAGTCAGATATTGAGCGTTTTATAAGTGAAAAGATTATACTTGCCAACAAGGTGATAGTGAAGCATGCTGTCACCAAAATAAGAGATGGTGATGTTCTTCTAACATATGGGTCCTCATCAGCTGTTGAAATGATACTATTACATGCACATGAGTTGGGGAAGCAGTTTCGTGTTGTCGTAGTTGACTCTCGTCCAAAGCTTAGAGGGCAACTCTTACTTCGCAGGCTTGTGGAGAAAGGTCTTAGCTGTACATATACTCATATAAATGCTGTTTCCTACATAATGCATGAAGTTACTCGGGTTTTTCTGGGTGCTTCAGCAGTTTTGTCTAATGGAACAGTATATTCAAGAGTAGGGACTGCATGTGTTGCAATGGTTGCTCATGCATTCCGTGTACCTGTCATAGTATGTTGTGAGGCCTATAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTGGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTTTTAAATCTGGTTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCCACAAGTGTGCCTGTGATTGTAAGAGAATATGGGAGAGAACAGGTCTGGATATAA

Predicted protein sequences of Glyma19g05900

Limit To All Plant Sequences

>Glyma19g05900.1   sequence type=predicted peptide   gene model=Glyma19g05900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSRRAPRAVIDPIPKIRQVGFFAPPERSQSGPPDPTHSSPPISSSLSPVMIPPPRHLSDNLLLHAPRPASSPLSAAAAAGGSGNSFDYGAVFFPAPLSPAIPSSSYSSRIIATTGEGGFFKGNGAGGGKVAASSFPRGGFDLTAMKKAAAASVVVPASELTTVSVVNDSLGIPEKEKGNKAGGSAVEVKDQPNSSKQQKPKLSKAERRALQESQRAAKAAAKGEGSKASGTVATMNAKPAKAVKPAQKVDNAAVAASEKKGGEIPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEAKFFHLSPVHPSVYKVGLQYLTGDIAGGNARCIAMLQAFQEAIKDYKVPHEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKSHIAKLPLTLSESEAKASLQSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGKQFRVVVVDSRPKLRGQLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASAVLSNGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGNPDVISNVLGREDVKHLDGWANIENLQLLNLVYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI*

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