Glyma18g42530 - SoyBase

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Report for Sequence Feature Glyma18g42530

Feature Type:	gene_model
Chromosome:	Gm18
Start:	51658008
stop:	51661158
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38090	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr2:15945278-15946775 FORWARD LENGTH=298	SoyBase	E_val: 5.00E-115	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0724	KOG	Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains	JGI		ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF29	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_D5FFG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB33 n=1 Tax=Medicago truncatula RepID=D5FFG7_MEDTR	SoyBase	E_val: 3.00E-161	ISS
UniRef100_I1N2U6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2U6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42530

Paralog	Evidence	Comments
Glyma07g17660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g197500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42530

Limit To All Plant Sequences

>Glyma18g42530.1   sequence type=CDS   gene model=Glyma18g42530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGGGGAATTGAAGTGCTCTCTCCAGCCTCCTATCTCCAAAACTCCAATTGGTTGTTCCAGGAAAGCAAGGAAGCAAGATGGACTGCAGAAGAGAACAAACTGTTTGAAAATGCCTTGGCTTACTATGATAAGGACACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATCAAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATCCCAGTTCCTGGCTATACTACTGCCAGTTCTTTCACATTGGAGTGGGTTAACAATCAAGGCTATGATGAGTTCAAGCAGTTCTGTAATGTTGGTGCGAAAAGGGGTGCATCCACGAGGCCAACTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTGCTGGGTCTCAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGAGGGAAGGATAAGAGAAGATCCAGTATCCATGACATCACAATGGTTAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAAACCCTCTTCTCCACTTCAGAATCAGGCATTGTCTAGCATGGTTAAGGAGGAATATGAGTGGAAATTGCCATGTGAGGGCATGCCCATTGTTTTCAATTCCACAAGTGGAAACATGTTCATGTCAGCACCACTGCATGGCATTTCTTCATATGAATCTAGACCACAGGAGCAAAATTTACTTAGACATTCTCCATGGATGCCAGTTTTCACCTTGTGA

Predicted protein sequences of Glyma18g42530

Limit To All Plant Sequences

>Glyma18g42530.1   sequence type=predicted peptide   gene model=Glyma18g42530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRGIEVLSPASYLQNSNWLFQESKEARWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIKQYRELEEDVSVIEAGLIPVPGYTTASSFTLEWVNNQGYDEFKQFCNVGAKRGASTRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTKPSSPLQNQALSSMVKEEYEWKLPCEGMPIVFNSTSGNMFMSAPLHGISSYESRPQEQNLLRHSPWMPVFTL*

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