Glyma18g05240 - SoyBase

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Report for Sequence Feature Glyma18g05240

Feature Type:	gene_model
Chromosome:	Gm18
Start:	3960437
stop:	3967405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g05240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70520	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 2 \| chr1:26584888-26587334 REVERSE LENGTH=649	SoyBase	E_val: 6.00E-125	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF580	Panther		JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7J7V5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7J7V5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F43F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F43F related cluster n=1 Tax=unknown RepID=UPI000233F43F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g05240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g05240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g046100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g05240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g05240

Limit To All Plant Sequences

>Glyma18g05240.2   sequence type=CDS   gene model=Glyma18g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATACCAAAACACTAGTATCTCAAACCGACCACAAAGCTATAAGGATGATTCTTCAACTTAAACTTTTGGCCTTAAGTTTGATATGGTGGAGCAGTATTAATGTTGAATATGCAGTTGCAGCCACACGTAACCCACGTCTAATAAACACTGGGTGTAGCCAAGTTAACGCTTCCAACCCGGGTAGCTTCTTTGCAAATGTCAATGATTCGATCTTAGAGATGAGAGAAGAAATTAGCAATGATAACAAGCACTTTGGCACAGCATATAAAGCCAGGGGAGAGGTGCTAACATATGCTATGTTTCAATGCAGAAACTATGTCTCCAAAAATGACTGTCTTGCTTGCTTCAACACGGCCTCCACCCAAATTCGCAACTGCTCCAAAGCCAACGGCGCCAGAGTCATCTACAATGACTGCTTCCTCAGGTATGAGAGTGAGAGGTTCTACCAACAGACGAATGAAATTGGTGGTGGGGTAACATGTGGGAACAAGAGTTCAAATGCCACAGGTTTTAGAGCAGTTGGACAACAAGCACTAGTGGACCTTCAAACAGCAACACCTAAAATTAAAGGTTTCTATGCAGCTACTAAGACACAGGTGGAGGGTGGTAGTGCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCTCCCCACAGAAATGTCTGGATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGCCTTCCAAGCACAGATGGTACAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACCATTGATATCAGACCCTATTTAAAAGAAGGAGGTTCAAGCAAGAAGTGGGCTATTATAGGTGGTGTCGTAGGAGGTGTTGTTCTCCTCCTTCTGTTGTTTGCTTGGAGATTGTTTACAAAACCAAAGAGGGTTCCCAAAGCTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTTCAAGTATAAAGATTTGAAAGCTGCAACAAAAAATTTCAGTGCTGACAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTCAAGAAACTAGTGTTGGGGAAATCAAACAAGATGAAGGATGATTTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGAAATCTCGTTAGACTTCTTGGCTGTTGCAGCATAGACCAAGAGAGAATCCTAGTTTATGAATACATGGCAAATAGCAGCCTTGACAAATTTTTATTTGGTGACAAAAAAGGTTCCCTCAATTGGAAACAACGCTATGATATAATTTTAGGCACAGCAAGGGGACTAGCATATCTACATGAGGAGTTCCATGTGTCCATCATTCATAGAGATATAAAGACCGGTAATATCCTTCTAGATGATGATCTACAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTTTGCCAAAGGATCGTTCTCATCTTAGCACAAAATTTGCAGGAACACTGGGATACACAGCACCTGAGTATGCAATGCAAGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTGGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGATTAGTGACGAGGGTCGTGAGTACCTTCTTCAACGAGCATGGAAACTGTATGAGAGAGGCATGCAGTTGGATCTTGTGGACAAGCGCATAGAACTTAATGAATATGACGCAGAAGAAGTGAAGAAAATCATAGAAATTGCGTTATTATGCACTCAAGCATCAGCTGCAACAAGGCCAACAATGTCTGAATTAGTAGTGCTGCTCAAAAGCAAGGGCTTAGTGGAGGACTTGCGACCAACTACGCCTGTGTATGTTGAAACGAATATGATGAACCGGGAAAGCATCTCTACTGGTTCTCCATCCAATGCTACTATTTCCATTTCTGTTCTATCAGCCCGTTGA

Predicted protein sequences of Glyma18g05240

Limit To All Plant Sequences

>Glyma18g05240.2   sequence type=predicted peptide   gene model=Glyma18g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTKTLVSQTDHKAIRMILQLKLLALSLIWWSSINVEYAVAATRNPRLINTGCSQVNASNPGSFFANVNDSILEMREEISNDNKHFGTAYKARGEVLTYAMFQCRNYVSKNDCLACFNTASTQIRNCSKANGARVIYNDCFLRYESERFYQQTNEIGGGVTCGNKSSNATGFRAVGQQALVDLQTATPKIKGFYAATKTQVEGGSAIYAIAQCVETASPQKCLDCMQVGYNNLQSCLPSTDGTAYDAGCFMRYSTTPFFADNQTIDIRPYLKEGGSSKKWAIIGGVVGGVVLLLLLFAWRLFTKPKRVPKADILGATELKGPVNFKYKDLKAATKNFSADNKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSNKMKDDFESEVKLISNVHHRNLVRLLGCCSIDQERILVYEYMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPKDRSHLSTKFAGTLGYTAPEYAMQGQLSEKADTYSYGIVVLEIISGQKSTDVKISDEGREYLLQRAWKLYERGMQLDLVDKRIELNEYDAEEVKKIIEIALLCTQASAATRPTMSELVVLLKSKGLVEDLRPTTPVYVETNMMNRESISTGSPSNATISISVLSAR*

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