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Report for Sequence Feature Glyma17g33480

Feature Type:gene_model
Chromosome:Gm17
Start:37376798
stop:37383425
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g33480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48270AT Annotation by Michelle Graham. TAIR10: G-protein-coupled receptor 1 | chr1:17828314-17830214 REVERSE LENGTH=326 SoyBaseE_val: 0ISS
GO:0000278GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle SoyBaseN/AISS
GO:0006571GO-bp Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process SoyBaseN/AISS
GO:0007166GO-bp Annotation by Michelle Graham. GO Biological Process: cell surface receptor signaling pathway SoyBaseN/AISS
GO:0007186GO-bp Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway SoyBaseN/AISS
GO:0007202GO-bp Annotation by Michelle Graham. GO Biological Process: activation of phospholipase C activity SoyBaseN/AISS
GO:0009094GO-bp Annotation by Michelle Graham. GO Biological Process: L-phenylalanine biosynthetic process SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0009785GO-bp Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway SoyBaseN/AISS
GO:0009788GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009939GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010231GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of seed dormancy SoyBaseN/AISS
GO:0010244GO-bp Annotation by Michelle Graham. GO Biological Process: response to low fluence blue light stimulus by blue low-fluence system SoyBaseN/AISS
GO:0032960GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of inositol trisphosphate biosynthetic process SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0044214GO-cc Annotation by Michelle Graham. GO Cellular Compartment: fully spanning plasma membrane SoyBaseN/AISS
GO:0004888GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane signaling receptor activity SoyBaseN/AISS
GO:0004930GO-mf Annotation by Michelle Graham. GO Molecular Function: G-protein coupled receptor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0030552GO-mf Annotation by Michelle Graham. GO Molecular Function: cAMP binding SoyBaseN/AISS
PTHR23112Panther G PROTEIN-COUPLED RECEPTOR 157-RELATED JGI ISS
PF05462PFAM Slime mold cyclic AMP receptor JGI ISS
UniRef100_G7I8Y3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Latrophilin receptor-like protein A n=1 Tax=Medicago truncatula RepID=G7I8Y3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E0CDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E0CD related cluster n=1 Tax=unknown RepID=UPI000233E0CD SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g33480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g33480
ParalogEvidenceComments
Glyma14g12700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g33480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g219300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g33480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma17g33480
>Glyma17g33480.2   sequence type=transcript   gene model=Glyma17g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCACAAAAATAAAATTTCAAAACCGTTTCACTACCACCTCTGTATTTCTTCATTTCGCGGTGAGTTAGAACTGATAATCAAGAGAGTGACTACTGGTCGGCGACAGCGAACTACTTCCGTGTAATGGCGACCTCCGTCGCAGTCGCCGGCGCTTTGACGGCGCATGATCGCCGGATTCTGACAGCGGTGAACGTCGGAGCGTCGAGCCTGTCGTTGGCCGGTTCCAGCTTCATTGTAGTGTGCTACCTCCTCTTCAAGGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTTCTACCTCGCTCTCTCTGATATGCTTTGCAGTTTCTTCGGCATAATAGGGGACCCGTCCAAAGGTTTCTTTTGTTATGCTCAGGGCTATAGCACACATTTCTTTTGTGTGGCATCTTTTCTATGGACTACAACAATTGCTTTTACCCTTCACCGCACTGTTGTAAAACATAAAACAGATGTTGAAGATTTGGAGGCCATGTTTCACTTGTATGTCTGGGGTACTTCCCTGGTTATGACAGTTATGCGCTCCTTTGGTAATGACCATAAACATTTTGGTGCATGGTGTTGGACACAAACAGGTCGCACAGGGAAGGCAATTCATTTTGTAACATTTTACATGCCACTCTGGGGTGCAATTCTGTATAATGGATTTACATACTTACAAGTAATACGCATGCTGAATAATGCAACCCGTATGGCGGTTGGTATGTCAGGCCAAACTTTTGTGTCAGATACAAGAGATAACATGAGGGCTTTGAATCGCTGGGGATACTATCCACTAATTCTGATAGGATCATGGACTTTTGGCACCATTAACCGTATTCATGATTTTTTTGAACCCAACCATAAGATCTTTTGGCTCACATTTCTTGATGTTGGAACGGCTGCTCTTATGGGCCTCTTTAACTCAATTGCTTATGGTCTCAATTCTTCTGTTCGTAGAGCAATTTGTGAAAGACTGGACAAGTTCTGGCCTGAGAGATTAAACAGATGGCTCCCTAACAGTTTAAAGTACAAGAACCTACAGCAAGAAAGTGAACTAGTTTTGTTCAAAACTGAAGATCAATAACAGTGAATGGACAAATTGTGATCCTCCATGCCAAGTGACATTTCTTATTCTAGTTTACTAAGATGCTGTTTTCATAGCAACTGAGGATCTGTAGACAGCAAACATTCCAGGCTATTTATTGCTCCGCTGTTTCAATTACGTGAATCGTGTTATTCACTTGCTGTATTTTATACTGCTGATGATCCTTCTCAAGCAGATAAGAGGATGGACCATTTCATGTGGAATCTGCTTCAGCTAATTGAAGACTACTTGTGACTGCAAAGAAGAGTGCTTTTATCTTTTTTCGCAAAAGGCTCTACATCTCTCCCTGTGATTCATCTTTTTAATAAGTCTTGACTTAGAGCATCACTGTATGCCCCCCTTGTATCCAGTCCTAATTTCTGCAATTCAATGTTTTATTAAATTTTATTAGTTGTATAGTTTAGATGCATTTCCAGATTGTTACACATTGCTAAACAACTTTTCTCCCAAATTTGCTGTGTGTATGTGGTTTTTGAGCTATAAAAGTACTTCTTCAGTTTGAAGCACACA
Coding sequences of Glyma17g33480
>Glyma17g33480.1   sequence type=CDS   gene model=Glyma17g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCTCCGTCGCAGTCGCCGGCGCTTTGACGGCGCATGATCGCCGGATTCTGACAGCGGTGAACGTCGGAGCGTCGAGCCTGTCGTTGGCCGGTTCCAGCTTCATTGTAGTGTGCTACCTCCTCTTCAAGGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTTCTACCTCGCTCTCTCTGATATGCTTTGCAGTTTCTTCGGCATAATAGGGGACCCGTCCAAAGGTTTCTTTTGTTATGCTCAGGGCTATAGCACACATTTCTTTTGTGTGGCATCTTTTCTATGGACTACAACAATTGCTTTTACCCTTCACCGCACTGTTGTAAAACATAAAACAGATGTTGAAGATTTGGAGGCCATGTTTCACTTGTATGTCTGGGGTACTTCCCTGGTTATGACAGTTATGCGCTCCTTTGGTAATGACCATAAACATTTTGGTGCATGGTGTTGGACACAAACAGGTCGCACAGGGAAGGCAGTTCATTTTGTAACATTTTACATGCCACTCTGGGGTGCAATTCTGTATAATGGATTTACATACTTACAAGTAATACGCATGCTGAATAATGCAACCCGTATGGCGGTTGGTATGTCAGGCCAAACTTTTGTGTCAGATACAAGAGATAACATGAGGGCTTTGAATCGCTGGGGATACTATCCACTAATTCTGATAGGATCATGGACTTTTGGCACCATTAACCGTATTCATGATTTTTTTGAACCCAACCATAAGATCTTTTGGCTCACATTTCTTGATGTTGGAACGGCTGCTCTTATGGGCCTCTTTAACTCAATTGCTTATGGTCTCAATTCTTCTGTTCGTAGAGCAATTTGTGAAAGACTGGACAAGTTCTGGCCTGAGAGATTAAACAGATGGCTCCCTAACAGTTTAAAGTACAAGAACCTACAGCAAGAAAGTGAACTAGTTTTGTTCAAAACTGAAGATCAATAA

>Glyma17g33480.2   sequence type=CDS   gene model=Glyma17g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCTCCGTCGCAGTCGCCGGCGCTTTGACGGCGCATGATCGCCGGATTCTGACAGCGGTGAACGTCGGAGCGTCGAGCCTGTCGTTGGCCGGTTCCAGCTTCATTGTAGTGTGCTACCTCCTCTTCAAGGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTTCTACCTCGCTCTCTCTGATATGCTTTGCAGTTTCTTCGGCATAATAGGGGACCCGTCCAAAGGTTTCTTTTGTTATGCTCAGGGCTATAGCACACATTTCTTTTGTGTGGCATCTTTTCTATGGACTACAACAATTGCTTTTACCCTTCACCGCACTGTTGTAAAACATAAAACAGATGTTGAAGATTTGGAGGCCATGTTTCACTTGTATGTCTGGGGTACTTCCCTGGTTATGACAGTTATGCGCTCCTTTGGTAATGACCATAAACATTTTGGTGCATGGTGTTGGACACAAACAGGTCGCACAGGGAAGGCAATTCATTTTGTAACATTTTACATGCCACTCTGGGGTGCAATTCTGTATAATGGATTTACATACTTACAAGTAATACGCATGCTGAATAATGCAACCCGTATGGCGGTTGGTATGTCAGGCCAAACTTTTGTGTCAGATACAAGAGATAACATGAGGGCTTTGAATCGCTGGGGATACTATCCACTAATTCTGATAGGATCATGGACTTTTGGCACCATTAACCGTATTCATGATTTTTTTGAACCCAACCATAAGATCTTTTGGCTCACATTTCTTGATGTTGGAACGGCTGCTCTTATGGGCCTCTTTAACTCAATTGCTTATGGTCTCAATTCTTCTGTTCGTAGAGCAATTTGTGAAAGACTGGACAAGTTCTGGCCTGAGAGATTAAACAGATGGCTCCCTAACAGTTTAAAGTACAAGAACCTACAGCAAGAAAGTGAACTAGTTTTGTTCAAAACTGAAGATCAATAA
Predicted protein sequences of Glyma17g33480
>Glyma17g33480.1   sequence type=predicted peptide   gene model=Glyma17g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSVAVAGALTAHDRRILTAVNVGASSLSLAGSSFIVVCYLLFKELRKFSFKLVFYLALSDMLCSFFGIIGDPSKGFFCYAQGYSTHFFCVASFLWTTTIAFTLHRTVVKHKTDVEDLEAMFHLYVWGTSLVMTVMRSFGNDHKHFGAWCWTQTGRTGKAVHFVTFYMPLWGAILYNGFTYLQVIRMLNNATRMAVGMSGQTFVSDTRDNMRALNRWGYYPLILIGSWTFGTINRIHDFFEPNHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAICERLDKFWPERLNRWLPNSLKYKNLQQESELVLFKTEDQ*

>Glyma17g33480.2   sequence type=predicted peptide   gene model=Glyma17g33480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSVAVAGALTAHDRRILTAVNVGASSLSLAGSSFIVVCYLLFKELRKFSFKLVFYLALSDMLCSFFGIIGDPSKGFFCYAQGYSTHFFCVASFLWTTTIAFTLHRTVVKHKTDVEDLEAMFHLYVWGTSLVMTVMRSFGNDHKHFGAWCWTQTGRTGKAIHFVTFYMPLWGAILYNGFTYLQVIRMLNNATRMAVGMSGQTFVSDTRDNMRALNRWGYYPLILIGSWTFGTINRIHDFFEPNHKIFWLTFLDVGTAALMGLFNSIAYGLNSSVRRAICERLDKFWPERLNRWLPNSLKYKNLQQESELVLFKTEDQ*






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