Report for Sequence Feature Glyma17g33100
Feature Type: gene_model
Chromosome: Gm17
Start: 36782960
stop: 36785124
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g33100
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G11000 AT
Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) | chr5:3479166-3480335 REVERSE LENGTH=389
SoyBase E_val: 2.00E-55 ISS
GO:0006857 GO-bp
Annotation by Michelle Graham. GO Biological Process: oligopeptide transport
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF05910 PFAM
Plant protein of unknown function (DUF868)
JGI ISS
UniRef100_I1MWX9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MWX9_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9LEU1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT5g11000/T30N20_270 n=1 Tax=Arabidopsis thaliana RepID=Q9LEU1_ARATH
SoyBase E_val: 7.00E-53 ISS
Expression Patterns of Glyma17g33100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g33100
Paralog Evidence Comments
Glyma14g13430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g33100 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g216500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g33100
Coding sequences of Glyma17g33100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g33100.1 sequence type=CDS gene model=Glyma17g33100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCTTCCTCTCTTCCCCCTTCTCTTCATGCTTCAGAGCTTCACAACGTACCAACCACGATCCCACAAACCTCACCACCTACATCTACCACACCGAATACGGCACCGTTTCACTGACATGGTCGCGCTCCCTGCTAGGCCGCTCCCTCCACGTGAACCTCCACAACCGTTCCTCCTTCCACCTCCTCCTCAAGCCATGGAAGAAAAACGGGTCCAAGAAGCTTTCTCACAATACGGTCTTCCTCTGGAACCTCTCCAACGCGAGGTTCGAGTCTGGACTCGAACCTCGCTCTAGATTCTACCTCGCCATCGAGGTAGAACATGGCCTCAGCCTACTCATTGGGGACTTATCCCCCAGGAGTAGTAAGGCCAAGAAGCCCAGCAAAACAAACCAATTACTCGTCCTGAAGCGGGACAACGTCCACGTGGCGCCACACCGCAGCCGGGTGTACCAAACCAAAGCGAAACTCGGAGGTAAGGTTAGGGAAATCGAAATAGATTGCGACGTTTACAACTGTGGCGGATACGGGTACGAGAACGAGAATAGTTCGAGGTTGTTGTTCAGTGTGGATGGAGAGAAGGTTCTTGAAGTGGCGAGGCTGAAGTGGAAGTTCAGAGGGAGCGAGCGTGTGGAGATCGACGGGGTGCACGTGCAGATCTCGTGGGACGTGCACGATTGGCTTTTTGAGAAGGATAAGGATATTGTTAATCATCGTAGTAGTAACAACAACAATAGTAATAATAATGGTATCGAGGGTCACGCGGTTTTCATGTTTAAGTTCGAGGAGGACGAGGTACGAGGTAGTGGTGGTGGGAAAGAGGAGGAGCAACAGTGGAGTATGGGGAGTGGTGGGGAGTGGAGGAATGGCAAGAGTTGGTCTTCTTCGTCTTTGTCGGTGTCTTCTACTTCTGGTGGATCTTTTGGGGGAAGTTCTTCGGTTATGGAATGGTCCAGTGTGGAGGAGAATGAGTTGGTGGTTCCTCTTGGGTTTTCTTTGGTGGTTTATGCTTGGAGAAGGTGA
Predicted protein sequences of Glyma17g33100
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g33100.1 sequence type=predicted peptide gene model=Glyma17g33100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFFLSSPFSSCFRASQRTNHDPTNLTTYIYHTEYGTVSLTWSRSLLGRSLHVNLHNRSSFHLLLKPWKKNGSKKLSHNTVFLWNLSNARFESGLEPRSRFYLAIEVEHGLSLLIGDLSPRSSKAKKPSKTNQLLVLKRDNVHVAPHRSRVYQTKAKLGGKVREIEIDCDVYNCGGYGYENENSSRLLFSVDGEKVLEVARLKWKFRGSERVEIDGVHVQISWDVHDWLFEKDKDIVNHRSSNNNNSNNNGIEGHAVFMFKFEEDEVRGSGGGKEEEQQWSMGSGGEWRNGKSWSSSSLSVSSTSGGSFGGSSSVMEWSSVEENELVVPLGFSLVVYAWRR*