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Report for Sequence Feature Glyma17g27370

Feature Type:gene_model
Chromosome:Gm17
Start:28843205
stop:28845061
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g27370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26340AT Annotation by Michelle Graham. TAIR10: F-box/RNI-like/FBD-like domains-containing protein | chr4:13324130-13325559 FORWARD LENGTH=419 SoyBaseE_val: 1.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00646PFAM F-box domain JGI ISS
PF08387PFAM FBD JGI ISS
UniRef100_G7IJK8UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7IJK8_MEDTR SoyBaseE_val: 2.00E-79ISS
UniRef100_I1MWB8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MWB8_SOYBN SoyBaseE_val: 1.00E-149ISS

Expression Patterns of Glyma17g27370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g27370 not represented in the dataset
Glyma17g27370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g27370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g193700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g27370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g27370
>Glyma17g27370.1   sequence type=CDS   gene model=Glyma17g27370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCAATGAGGAGAAGGTGTATAAACAAGAGATTGAAACCCAATCCTGAAGGTCAAGACTTTATTAGCAACCTACCTGATTTCATTATTGGTCTGATTCTCTCGTTGCTTCCAACAAAAGATGCATTTCGTACCAGTGTTTTATCCAAGAGATGGATAAACCTCTGGATGTTCATCACTGCAGTAGAAATTAAGGATAAAGAACAACTCTCTCGCAAAAAGATAAGGAAAATCCCCTTCTATAAATTTGTGAATAAAGTACTACTTCATCTAGAGAGTTCAAGCATCCAAAGTTTCTCTCTTTCTCTTTCACAGAGTTATAGACATTGCCGTGTTGATAAGTGGATTAATGATATTTTAATAAATCTGAGAGTCAAAGAGCTTTACATCAATTCGAAGCAAAATCTCAGCATTTCTTGCCATACCCTTTTGGAATCCCCCTCCTTAGAGGTATTGATGCTGAATATGAATTGGTATTCTATCACTCTTCCCACCTTTGTTTGTCTTTCATCCCTCACTGTCCTCAAGTTCTCCAAAATCACAGTGACCTGTGACCCTTTCAAGTCGCAAATGTTGACCCTTAACTTCCCAGTCCTTAGGGAGTACTTGACAGAAGATTGCAATTGGTCAAATGTAAAGGGTGTCACATTAGAAGTGCCTCTTCTTGAAGTGCTTTCAATTAAGTATTCAAGATTCCCAATATCTAAAGAGTCGAATACTGTAATCAAGTTTTGTGCCCCGTGTCTTGCGAAATTCTATTATTATGGTCTTCTGTTACCAGACACCAACTCGTTAGACCTATCTATAGGACATATTGCTTATGCTCATATTGATATTTGTCCGTTCATTTATATGGGGAGTGCAGAACAAATGGCGCTTATTGCTTGTGAGCTTTTGAAAAAGTTCAATAATAATGTGGAATGTCTAACGTTTCAGTGGCCAGAGATTGTTGCACCGGCTAAGCTTCCTACTTTTCGAATGTTGAGTTGTTTGGAGTTAGGGTATCTTACGGGTGAAGTTTTGTTGAACTTCCTTCGAAACACGCCATTTCTGAAGACTCTTGTTATTTTAAAGGGCATATATCAATTTGATGAAGAACTCAGTAATCCTGATAATGTGCCGTCATGTTTTATGTCTAATCTTCAAGTGGTGAATTTTGGAGCTCTAAATGGTAAAAAACACGAGCTGCGTCTTGCTAAATTTATAATGGATAATGCTAAAGAGTTGCAGAGGGTGAGTTTCAGTGCTGCTAGGAATATGCACAGGTCAAAATTTGAAAAGGTTAAAAAGAAGATAATTTCGTTTAAGAAAAGTGTTAGTGTTGCGGTAATAGATTTTCTACCCCTTCATAATTAG
Predicted protein sequences of Glyma17g27370
>Glyma17g27370.1   sequence type=predicted peptide   gene model=Glyma17g27370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSMRRRCINKRLKPNPEGQDFISNLPDFIIGLILSLLPTKDAFRTSVLSKRWINLWMFITAVEIKDKEQLSRKKIRKIPFYKFVNKVLLHLESSSIQSFSLSLSQSYRHCRVDKWINDILINLRVKELYINSKQNLSISCHTLLESPSLEVLMLNMNWYSITLPTFVCLSSLTVLKFSKITVTCDPFKSQMLTLNFPVLREYLTEDCNWSNVKGVTLEVPLLEVLSIKYSRFPISKESNTVIKFCAPCLAKFYYYGLLLPDTNSLDLSIGHIAYAHIDICPFIYMGSAEQMALIACELLKKFNNNVECLTFQWPEIVAPAKLPTFRMLSCLELGYLTGEVLLNFLRNTPFLKTLVILKGIYQFDEELSNPDNVPSCFMSNLQVVNFGALNGKKHELRLAKFIMDNAKELQRVSFSAARNMHRSKFEKVKKKIISFKKSVSVAVIDFLPLHN*






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