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Report for Sequence Feature Glyma17g20290

Feature Type:gene_model
Chromosome:Gm17
Start:18900234
stop:18903914
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G50560AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr3:18761247-18763835 REVERSE LENGTH=272 SoyBaseE_val: 1.00E-119ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1014 KOG 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 JGI ISS
KOG1199 KOG Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase JGI ISS
PTHR24316Panther FAMILY NOT NAMED JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_B9S8J4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Short-chain dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S8J4_RICCO SoyBaseE_val: 2.00E-150ISS
UniRef100_UPI000233F0A0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F0A0 related cluster n=1 Tax=unknown RepID=UPI000233F0A0 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g176200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g20290.2   sequence type=transcript   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTCTTATTGTAGAATTTTTTTGCAACTATATAATATTTTAGGTTAGGAATGAAGTCAGTGTACAATTATGTCACGTTGAGAGGAAGTACAGAAAGGAGAGGCTGCTGGAGCCGAACTGGAGGGAAAACGAATGCTTCTTGTAAGGGAGGCAATGATTCAGACATACCAAAGACATCTCACCCCCTTCCTCCAAAACGCCAATCTTCTCCTCTCCACATCTTAAATATCCCCCTCTTTCTAAATTCCACCAACCACTTTCTTGCTTTCACTTCCAATTCTCAATTCCTCTTTATTTGATTCTGGGTTCTTTTTTTGTTTTTTGCCATACACATAATTGTCTAAAGGGAGAAAGAAAAAGAGAGATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGGTTGAGGCATTGATGATGGATGGAATTTGCATGTTGTGGGGGCACACAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAGCTACTAAGTTAACCCCCAATTAAAAATGTGCCTAGCTCAATTATTATATTTATTTTTCGCTCTATAGTCTATATAGTCTTCAGTGTCAAATCTCAATCACTTCATCCATGACCTCATGGCATCAACCGTGAATTCAATGATGTTTACAATCAACACTGTTGGGCTTGCCGGTGTGCTGAATTGCTTGTGTCTCGGGATATTAATCTTTGATCGACCCAAAAATATTTTATTCACCCAAAAAGAAATTATGTGTATGTACAAAGATATTATACGGTGTGTTGTTACTTGTTAGTTTGGGTCAATCAAGTAGTAATTTTATTACTGTTTTTGTAGAGACAAAATTAAGAAAAGGATGTGTATATTAGTATATCATATATATCATCCGTTTGTGTGTTAATTTGGATTTGGATTATTCTCTCTTGTCAAAATATATTTGACATTTACAAAATCGTGATTAATGAGTGATTTTGTCGGTAATGGGTCGAGTTGTATATGTTTTGGAGGAAGTGAGGGGTTGTGGGCCCCATTTGAGCAAAAGTTAAGGGGAACGAAGGAGTGAGATGGGGACATGGTTGCATGGACAATAGTAGGAATTCGTGTTCTAATTTTGGACACACAAAAAACTGTGTGTACGTACACATGCTTGAATCCTCGAAAGTTTGAGTCTTGTTATTTTCATGCTAT

>Glyma17g20290.3   sequence type=transcript   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTCTTATTGTAGAATTTTTTTGCAACTATATAATATTTTAGGTTAGGAATGAAGTCAGTGTACAATTATGTCACGTTGAGAGGAAGTACAGAAAGGAGAGGCTGCTGGAGCCGAACTGGAGGGAAAACGAATGCTTCTTGTAAGGGAGGCAATGATTCAGACATACCAAAGACATCTCACCCCCTTCCTCCAAAACGCCAATCTTCTCCTCTCCACATCTTAAATATCCCCCTCTTTCTAAATTCCACCAACCACTTTCTTGCTTTCACTTCCAATTCTCAATTCCTCTTTATTTGATTCTGGGTTCTTTTTTTGTTTTTTGCCATACACATAATTGTCTAAAGGGAGAAAGAAAAAGAGAGATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAACACTGCACCCAATGGGGGAGATGAGACAGGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAGCTACTAAGTTAACCCCCAATTAAAAATGTGCCTAGCTCAATTATTATATTTATTTTTCGCTCTATAGTCTATATAGTCTTCAGTGTCAAATCTCAATCACTTCATCCATGACCTCATGGCATCAACCGTGAATTCAATGATGTTTACAATCAACACTGTTGGGCTTGCCGGTGTGCTGAATTGCTTGTGTCTCGGGATATTAATCTTTGATCGACCCAAAAATATTTTATTCACCCAAAAAGAAATTATGTGTATGTACAAAGATATTATACGGTGTGTTGTTACTTGTTAGTTTGGGTCAATCAAGTAGTAATTTTATTACTGTTTTTGTAGAGACAAAATTAAGAAAAGGATGTGTATATTAGTATATCATATATATCATCCGTTTGTGTGTTAATTTGGATTTGGATTATTCTCTCTTGTCAAAATATATTTGACATTTACAAAATCGTGATTAATGAGTGATTTTGTCGGTAATGGGTCGAGTTGTATATGTTTTGGAGGAAGTGAGGGGTTGTGGGCCCCATTTGAGCAAAAGTTAAGGGGAACGAAGGAGTGAGATGGGGACATGGTTGCATGGACAATAGTAGGAATTCGTGTTCTAATTTTGGACACACAAAAAACTGTGTGTACGTACACATGCTTGAATCCTCGAAAGTTTGAGTCTTGTTATTTTCATGCTAT

>Glyma17g20290.4   sequence type=transcript   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCTTTCTTATTGTAGAATTTTTTTGCAACTATATAATATTTTAGGTTAGGAATGAAGTCAGTGTACAATTATGTCACGTTGAGAGGAAGTACAGAAAGGAGAGGCTGCTGGAGCCGAACTGGAGGGAAAACGAATGCTTCTTGTAAGGGAGGCAATGATTCAGACATACCAAAGACATCTCACCCCCTTCCTCCAAAACGCCAATCTTCTCCTCTCCACATCTTAAATATCCCCCTCTTTCTAAATTCCACCAACCACTTTCTTGCTTTCACTTCCAATTCTCAATTCCTCTTTATTTGATTCTGGGTTCTTTTTTTGTTTTTTGCCATACACATAATTGTCTAAAGGGAGAAAGAAAAAGAGAGATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAACACTGCACCCAATGGGGGAGATGAGACAGGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGGTTGAGGCATTGATGATGGATGGAATTTGCATGTTGTGGGGGCACACAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAGCTACTAAGTTAACCCCCAATTAAAAATGTGCCTAGCTCAATTATTATATTTATTTTTCGCTCTATAGTCTATATAGTCTTCAGTGTCAAATCTCAATCACTTCATCCATGACCTCATGGCATCAACCGTGAATTCAATGATGTTTACAATCAACACTGTTGGGCTTGCCGGTGTGCTGAATTGCTTGTGTCTCGGGATATTAATCTTTGATCGACCCAAAAATATTTTATTCACCCAAAAAGAAATTATGTGTATGTACAAAGATATTATACGGTGTGTTGTTACTTGTTAGTTTGGGTCAATCAAGTAGTAATTTTATTACTGTTTTTGTAGAGACAAAATTAAGAAAAGGATGTGTATATTAGTATATCATATATATCATCCGTTTGTGTGTTAATTTGGATTTGGATTATTCTCTCTTGTCAAAATATATTTGACATTTACAAAATCGTGATTAATGAGTGATTTTGTCGGTAATGGGTCGAGTTGTATATGTTTTGGAGGAAGTGAGGGGTTGTGGGCCCCATTTGAGCAAAAGTTAAGGGGAACGAAGGAGTGAGATGGGGACATGGTTGCATGGACAATAGTAGGAATTCGTGTTCTAATTTTGGACACACAAAAAACTGTGTGTACGTACACATGCTTGAATCCTCGAAAGTTTGAGTCTTGTTATTTTCATGCTAT

>Glyma17g20290.1   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGAGGACCAACCTTGACGTCATCATCTTCACAGAGGGGAAATTCATTGGGGGAGCAAAGCAGTGGAGGAGGAGGCGAGGGTACAATGGACCCAGACGCACTCGCTCAAACCTTCTGGCACTTGCACGTTCAGGACCGGAACGCTTGGACCCTGGAGATGGATCTTCGTTCACCCTCTGCTAGATTCTTCTAG

>Glyma17g20290.2   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATGCTGTGGGAAATTCGCTTTGAGAGCACTATCGCAATGTTTGGCCAAGGAATTTCAACCTCAAGGAGTGCACCTAGCTCATGTTATCATTGACGGTGTTATTGGCCCACCCAGGTTGAGGCATTGA

>Glyma17g20290.3   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAA

>Glyma17g20290.4   sequence type=CDS   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAAGCATGGCAAGCTCCGCTTCCTCGCGAGGCATTGCAGCTATCGTCGGTGTGGGCCCCAACCTCGGCCTCTCCATCGCTCGCAAGTTCGCTCACGAGGGCTACACGGTTGCCATCCTCGCTCGTGACTTGGGGAGGTTGTCAAGATTTGCTGATGAAATAGCGAGGGAAGAGAAGGCGCAGGTTTTTGCTATAAGAATAGACTGTTCCGATTCAAGAAGCGTGAGAGAGGCATTTGAAGGAGTGCTCTCTCTGGGATTCGTGGAAATTCTTGTCTACAATGCTTACCAGCCACTACCTTGGTGCCCTTCCTCCTTCCAAGATCTTCGCATCGAATCCTTTGAAAGATCCCTTGCCGTTTCTTCCGTCGGCGCCTTCCACTGCGCTCAACAGGTGCTGCCGGGTATGGTTGAAAGAGGAAAAGGAACGATTCTCTTCACTGGCTGCTCCGCTTCTCTAAACGGCATTGCTGGATACTCTGAACTATAA

>Glyma17g20290.1   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSELCCGKFALRALSQCLAKEFQPQGVHLAHVIIDGVIGPPRGPTLTSSSSQRGNSLGEQSSGGGGEGTMDPDALAQTFWHLHVQDRNAWTLEMDLRSPSARFF*

>Glyma17g20290.2   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSELCCGKFALRALSQCLAKEFQPQGVHLAHVIIDGVIGPPRLRH*

>Glyma17g20290.3   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSEL*

>Glyma17g20290.4   sequence type=predicted peptide   gene model=Glyma17g20290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSMASSASSRGIAAIVGVGPNLGLSIARKFAHEGYTVAILARDLGRLSRFADEIAREEKAQVFAIRIDCSDSRSVREAFEGVLSLGFVEILVYNAYQPLPWCPSSFQDLRIESFERSLAVSSVGAFHCAQQVLPGMVERGKGTILFTGCSASLNGIAGYSEL*







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