Glyma17g14530 - SoyBase

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Report for Sequence Feature Glyma17g14530

Feature Type:	gene_model
Chromosome:	Gm17
Start:	11275929
stop:	11279878
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g14530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12420	AT	Annotation by Michelle Graham. TAIR10: ACT domain repeat 8 \| chr1:4226673-4228917 REVERSE LENGTH=441	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
PTHR13734	Panther	TRNA-NUCLEOTIDYLTRANSFERASE 1	JGI		ISS
PTHR13734:SF23	Panther	ACR3 (ACT DOMAIN REPEAT 3)	JGI		ISS
PF01842	PFAM	ACT domain	JGI		ISS
UniRef100_B9RBU8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBU8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MUV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MUV8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g14530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g14530

Paralog	Evidence	Comments
Glyma05g04050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g14530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g136300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g14530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g14530

Limit To All Plant Sequences

>Glyma17g14530.1   sequence type=CDS   gene model=Glyma17g14530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTGGCCAGCATGTACCGATGAGTACGAGAAACTCGTAATTCGCATGAGCACCCCCAGGGTTGTCATAGACAATGCCGTGTGCTCCACTGCGACAATAGTCAAGGTTGATAGCGCCAGAAAGCATGGGATCCTTATTGATGCCGTACAAGTTCTCTCTGATCTTAACCTTTCAATTAAGAAGGCTTACATTTCTTCTGATGGCAGGTGGTTCATGGATGTTTTCCATGTCACGGATCAAAACGGAAACAAGCTCACAGATGAGAGCGTCTTAAGCTATATTGAACAGTCACTTGGTAGCATTCACAATGGAAAAACCAGTCACTCAAACGGTCTCACGATCCTTGAATTAACCGGCACTGACCGCGTTGGTCTTCTTTCGGAGGTGTTTGCTGTTCTGGCTGAACAGCAATGTGATGTGGTCGATGCTAAGGTTTGGACTCACAATGGCCGGATTGCCTCCTTAATCTACGTGAAAGACTCCAATTCTGAGACTCCTATTGAGGACTCTCAGAGAATCAGTACCATTGAAGCACGTTTGAGAAATGTTTTAAAGGGTGACAACGATATTAGGAATGCAAAAACTTCCGTCACTAATGCTGTTTTGCATGCCGAAAGAAGGTTGCACCAAATGATGTACACTGACCGTGATTACCAGAGGAATCCCATTTTCAAATTCTCTTCTGATACCCCAATTGTCACCGTCCAAAATTGGGCAGAAAGGGGTTATTCTGTCGTCAATGTTCAGTGCAAAGATCGAGTTAAGCTTTTGTTTGATGTCGTGTGCAATTTGACAGAAATGGAATATGTTGTGTTCCATGCCACTATCAAGACAACAATCGACCAAGCGTATCTGGAGTTTTATATAAGACACAAGGATGGCACCCCAATTAGTTCAGAACCAGAGCGACACCGTGTGATTCAATGCTTGCAAGCTGCAGTGGAGAGAAGGGCATTTGAGGGTGTTAGGCTAGAGTTATGCACCGAAGACAGACAAGGACTTCTTGCAGAAGTGATGAGAACTTTCCGAGAAAATGGGCTGAATGTGACAAGGGCAGAGATATCTACCATAGGGGACATGGCATCAAATGTTTTCTATGTAACAGATGCGATAGGATACCCTGCTGATCCAAAAATCGTGGAATCTGTAAGGCAGAAAGTAGGGTTAAGCAATTTAAAAGTCAAGGAGTTGCCATTGGTATGCCATGAGAAGGCAGAAAGGGAGGATCAACCAGTTGGGGTTGGTGGGGCAGTGTTACTGTGTCTGGGGAGCCTCGTGAGAAGGAATCTTTACAATTTGGGTTTGATAAAATCTTGTTCTTAA

Predicted protein sequences of Glyma17g14530

Limit To All Plant Sequences

>Glyma17g14530.1   sequence type=predicted peptide   gene model=Glyma17g14530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEWPACTDEYEKLVIRMSTPRVVIDNAVCSTATIVKVDSARKHGILIDAVQVLSDLNLSIKKAYISSDGRWFMDVFHVTDQNGNKLTDESVLSYIEQSLGSIHNGKTSHSNGLTILELTGTDRVGLLSEVFAVLAEQQCDVVDAKVWTHNGRIASLIYVKDSNSETPIEDSQRISTIEARLRNVLKGDNDIRNAKTSVTNAVLHAERRLHQMMYTDRDYQRNPIFKFSSDTPIVTVQNWAERGYSVVNVQCKDRVKLLFDVVCNLTEMEYVVFHATIKTTIDQAYLEFYIRHKDGTPISSEPERHRVIQCLQAAVERRAFEGVRLELCTEDRQGLLAEVMRTFRENGLNVTRAEISTIGDMASNVFYVTDAIGYPADPKIVESVRQKVGLSNLKVKELPLVCHEKAEREDQPVGVGGAVLLCLGSLVRRNLYNLGLIKSCS*

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