Glyma16g32540 - SoyBase

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Report for Sequence Feature Glyma16g32540

Feature Type:	gene_model
Chromosome:	Gm16
Start:	35676577
stop:	35684221
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g32540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45650	AT	Annotation by Michelle Graham. TAIR10: AGAMOUS-like 6 \| chr2:18804453-18806291 FORWARD LENGTH=252	SoyBase	E_val: 2.00E-58	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0048437	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF19	Panther	MADS BOX PROTEIN	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_I1MQ50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQ50_SOYBN	SoyBase	E_val: 9.00E-170	ISS
UniRef100_Q56NI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MADS box protein M3 n=1 Tax=Pisum sativum RepID=Q56NI6_PEA	SoyBase	E_val: 4.00E-90	ISS

Expression Patterns of Glyma16g32540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g32540

Paralog	Evidence	Comments
Glyma09g27461	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g32540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g200700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g32540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g32540

Limit To All Plant Sequences

>Glyma16g32540.2   sequence type=transcript   gene model=Glyma16g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAACTTTAGCTTTACGATGTGTTCTTGACCTGATATTGCGGGGAAAAGCGTAGTCATCAGTTTGCCGATAGAAGTAGAAAATGGAATCTTGATCGTATTATCTTTGTTGCTCATCCATTACTCCTTCTGCAGTAGAATAATATATAAAGAGAGAAGAGTGCAATCTAGAACCACATAGTTATTTTACTGTGTGAGTGAGAGAGAGAAAATTAACATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACATTCTCAAAACGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTATGTGACGCTGAAGTTGCCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCGCAGACTGACGATTCATTGGAACACGATTCACAGAGTTCATACCATGAATTCTTGAAATTAAGAGCGAAATATGAATCACTTGAGCTGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGATTTGCAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAACTCGACAGCATCAAACGAAGAAACTCTTGGCACGAGCAGATGAATTACGCGAAAAGGTTCACAAGTTGGAGGATCTTAACAAACAATTAGAGTCCAAGGAAAAAGATGAATTCTCAAGCTTCATCCTTGACAATAACAATTACATTCAAGTGCATGCTACACAAGGTGATCAATTTGAGTCTGGGACAACACTAAACACATGGTTTCAACGCCAAGATTCAAAGGAAAAAGCAATTGATACCAAGACAGACGGTAGTCAAAGCAGTCACAACAAAAACAAAGGATGGCTATTGTGAATATTCATTTAATTTACATGTTGAAAAAAAATATCTATCAATAACTCAGGGGTGCCCATGTATTGGTATAATTCACAAAATAGTTTATATAAAGTATTATTTCTACTAAACACACACATTGTTCCTAAAATAAGATATTGTACTTTATGCAACAGTAAAGAGGAAAAATTATGTATTTCAACTATCATTGTATAAATTGTCATTAGAAGATGTTCTTAAATATTGATATTTT

Coding sequences of Glyma16g32540

Limit To All Plant Sequences

>Glyma16g32540.1   sequence type=CDS   gene model=Glyma16g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACATTCTCAAAACGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTATGTGACGCTGAAGTTGCCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCGCAGACTGACGATTCATTGGAACACGATTCACAGAGTTCATACCATGAATTCTTGAAATTAAGAGCGAAATATGAATCACTTGAGCTGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGATTTGCAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAACTCGACAGCATCAAACGAAGAAACTCTTGGCACGAGCAGATGAATTACGCGAAAAGGTTCACAAGTTGGAGGATCTTAACAAACAATTAGAGTCCAAGGAAAAAGATGAATTCTCAAGCTTCATCCTTGACAATAACAATTACATTCAAGTGCATGCTACACAAGGTGATCAATTTGAGTCTGGGACAACACTAAACACATGTAGGTTTCAACGCCAAGATTCAAAGGAAAAAGCAATTGATACCAAGACAGACGGTAGTCAAAGCAGTCACAACAAAAACAAAGGATGGCTATTGTGA

>Glyma16g32540.2   sequence type=CDS   gene model=Glyma16g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACATTCTCAAAACGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTATGTGACGCTGAAGTTGCCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTAACAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCGCAGACTGACGATTCATTGGAACACGATTCACAGAGTTCATACCATGAATTCTTGAAATTAAGAGCGAAATATGAATCACTTGAGCTGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCTTTAAAGATTTGCAGAGCCTTGAGAAACAACTAGACATAACGCTCGCACTAACTCGACAGCATCAAACGAAGAAACTCTTGGCACGAGCAGATGAATTACGCGAAAAGGTTCACAAGTTGGAGGATCTTAACAAACAATTAGAGTCCAAGGAAAAAGATGAATTCTCAAGCTTCATCCTTGACAATAACAATTACATTCAAGTGCATGCTACACAAGGTGATCAATTTGAGTCTGGGACAACACTAAACACATGGTTTCAACGCCAAGATTCAAAGGAAAAAGCAATTGATACCAAGACAGACGGTAGTCAAAGCAGTCACAACAAAAACAAAGGATGGCTATTGTGA

Predicted protein sequences of Glyma16g32540

Limit To All Plant Sequences

>Glyma16g32540.1   sequence type=predicted peptide   gene model=Glyma16g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYSKSQTDDSLEHDSQSSYHEFLKLRAKYESLELTQRHFQGEELEPLSFKDLQSLEKQLDITLALTRQHQTKKLLARADELREKVHKLEDLNKQLESKEKDEFSSFILDNNNYIQVHATQGDQFESGTTLNTCRFQRQDSKEKAIDTKTDGSQSSHNKNKGWLL*

>Glyma16g32540.2   sequence type=predicted peptide   gene model=Glyma16g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYSKSQTDDSLEHDSQSSYHEFLKLRAKYESLELTQRHFQGEELEPLSFKDLQSLEKQLDITLALTRQHQTKKLLARADELREKVHKLEDLNKQLESKEKDEFSSFILDNNNYIQVHATQGDQFESGTTLNTWFQRQDSKEKAIDTKTDGSQSSHNKNKGWLL*

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