|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G21310 | AT | Annotation by Michelle Graham. TAIR10: extensin 3 | chr1:7453693-7454988 REVERSE LENGTH=431 | SoyBase | E_val: 3.00E-14 | ISS |
GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
GO:0005199 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of cell wall | SoyBase | N/A | ISS |
PF04554 | PFAM | Extensin-like region | JGI | ISS | |
UniRef100_D8QY50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Selaginella moellendorffii RepID=D8QY50_SELML | SoyBase | E_val: 2.00E-37 | ISS |
UniRef100_Q8LK15 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Extensin n=1 Tax=Brassica napus RepID=Q8LK15_BRANA | SoyBase | E_val: 3.00E-21 | ISS |
Glyma16g28605 not represented in the dataset |
Glyma16g28605 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.16g170100 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g28605.1 sequence type=CDS gene model=Glyma16g28605 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCTCTAATGGCCTCTCTTACTCTCACTCTTGTATTGGCAATAGTTTCTCTAAGCTTGTCATCTCAAGCCTCAGCTGACAAGTACGACTATTCATCTCCACCACCACCAGTTTACAAGTACAAGTCCCCACCACCACCCTACAAGTATTCATCTCCTCCACCACCTCCTAAGAAGCCTTACAAATACCCATCACCACCACCACCAGTTTACAAATACAAGTCACCACCACCACCCTACAAGTACCCTTCTCCTCCACCACCACCTAAAAAGCCCTACAAATACCCATCACCCCCACCTCCAGTTTACAAATACAAGTCACCACCACCACCAGTTTACAAGTACAAGTCCCCACCACCACCACCTAAGAAGCCCTACAAATACCCATCACCACCACCACCAGTTTACAAATACAAGTCACCACCCCCACCCTACAAGTACCCTTCTCCTCCACCACCTCCTAAGAAACCCTACAAATACCCATCTCCTCCACCCCCAGTATACAAGTACAAGTCCCCTCCTCCTCCATACAAGTACTCTTCTCCTCCACCTCCACCATACAAGTACCCTTCTCCACCACCCCCAGCTTACTACTACAAGTCACCTCCACCACCACCTAAGAAACCATACAAGTATCCATCTCCACCTCCTCCACACTATGTCTATGCATCACCACCTCCCCCATACCACTACTAG
>Glyma16g28605.1 sequence type=predicted peptide gene model=Glyma16g28605 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLMASLTLTLVLAIVSLSLSSQASADKYDYSSPPPPVYKYKSPPPPYKYSSPPPPPKKPYKYPSPPPPVYKYKSPPPPYKYPSPPPPPKKPYKYPSPPPPVYKYKSPPPPVYKYKSPPPPPKKPYKYPSPPPPVYKYKSPPPPYKYPSPPPPPKKPYKYPSPPPPVYKYKSPPPPYKYSSPPPPPYKYPSPPPPAYYYKSPPPPPKKPYKYPSPPPPHYVYASPPPPYHY*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||