Glyma16g03580 - SoyBase

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Report for Sequence Feature Glyma16g03580

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3006233
stop:	3011441
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g03580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01270	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr4:532351-534891 FORWARD LENGTH=506	SoyBase	E_val: 1.00E-99	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0827	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR22937	Panther	RING FINGER CONTAINING PROTEIN	JGI		ISS
PTHR22937:SF22	Panther		JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7KT17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methylenetetrahydrofolate reductase (Fragment) n=1 Tax=Medicago truncatula RepID=G7KT17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BBED	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BBED related cluster n=1 Tax=unknown RepID=UPI000233BBED	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g03580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g03580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g032000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g03580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g03580

Limit To All Plant Sequences

>Glyma16g03580.2   sequence type=CDS   gene model=Glyma16g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACTCCGGCAGTGACTTCGCCGGCATCATTTGTTCGATCTGCTACGAACCCCTCAACCCCATTAACGAGGATCTTCAATCGGTCTCCATCTGTGGCCACGTTTTTCACGAGCTTTGTCTACAGCAGTGGTTCGAGTACTCTTCGAAAGGGAAGAAGCACACTTGCCCCATTTGCAAACAGGGTTGCAGGGCCAGTGACGCGTGCAGGCTCTATTTTCAGTCAGTGGGAGATGCGAACAATAGTGTGAAGCCTTCGAAGTGCTTTGAACTTGAGGAAGATGCTGGGGTTCTGCGTAGGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTCAGGTTGAAGGGCAAACAAAGGAATTAGAAGGACTCAATGAGGAGCTTTGTACTTGCAAGGAGCAGGCAAAGATAGAGACAGCTTTAAAGAATGAGGCTTTAAATCAAAAAGCATCTATACAATTCCAGCTTCAAATGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTGTTTTAGATTAAAAGAAAGGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTATCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGACACAATAGATACATTGAAAAGATCTCTGGTCATGCGGAATAGGAGTTACAAAGAATTGATGGCCAAGTGCAATATTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCTAAAGAGAAGATCACAAAACTGAAGGAGAGGGTACAAGAACTGGAGACATTAGCTGAATCAAAAGAGAACAAATATCTGAGGTCTCTGAAACTTTCAAAAATAACAAAGAGTTCAAAGAATCTCGAAGAAAACATCAAATCTGATTCTGAGGTATTGACAGCGTGCAAATTTTCATCAAAAGAACAAAGCAAACAAATTTCAATACCCAAATCTGGAATAGACCTGACTGCAAACAACAACAGTAAATCTTTTCAATCTTTCAAGATAGAGAACTCCAATGTTACTAAAAATAAGACTGTGAATATTAGTAATGGAAGTAGAAGTACCTTTTCTCTTGATATAAAAAGAGAGTATATCTCAATTGATGACAATGATTCAGAAGGCACTAATGCTTTGCAAGGATGTTCAAAACACAACTACAAAGATCAAGACTGGGATGATATTGCTTTTAGCAAGCCTTCTCTTGTGAAGCTAGAGCCTGTGTCTGGCATAAAGGCTGAAACATCATTGCAAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATATTGACATTGACATGGCTAACATTTCAGCTAGTGCTATGGATGAAGATGTAACCTTACAAGCCAACATTAAACAACCCATGGTGAACATTAGGAAGGAGTCACCATTAACACTTTCAAATTCAGCTCCAGGGAGCATCTGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAACGAGGACAGAACAGTGAACCATCATCTGCAAAACGATCAAGTGATGGGGATTTAATTGCTGTTGGGGCTGATGGTAGAGGGGGAAGAATAAAAGTTCTAAGGACTTCTAGCCAAATTCTCTCGGGTGGTAAGGAAAATTTACTAAGTTCAAAAAGGTCAAAGTTAGGAGTTAAAACAAGTGGTTTGCAATCGCAGGGGTGCCTGCAGATAGAACACTTTTTTGGGAGAGTCTCTCAGTAA

Predicted protein sequences of Glyma16g03580

Limit To All Plant Sequences

>Glyma16g03580.2   sequence type=predicted peptide   gene model=Glyma16g03580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDSGSDFAGIICSICYEPLNPINEDLQSVSICGHVFHELCLQQWFEYSSKGKKHTCPICKQGCRASDACRLYFQSVGDANNSVKPSKCFELEEDAGVLRREVKRLEVKVSGLNSQVEGQTKELEGLNEELCTCKEQAKIETALKNEALNQKASIQFQLQMKSEELEKSTLECFRLKERNMALAKELAALKLVSDLDIDEEEVLKLATLGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNILGRGEARYSKKLEKAKEKITKLKERVQELETLAESKENKYLRSLKLSKITKSSKNLEENIKSDSEVLTACKFSSKEQSKQISIPKSGIDLTANNNSKSFQSFKIENSNVTKNKTVNISNGSRSTFSLDIKREYISIDDNDSEGTNALQGCSKHNYKDQDWDDIAFSKPSLVKLEPVSGIKAETSLQGKCTLAESPRVDIDIDMANISASAMDEDVTLQANIKQPMVNIRKESPLTLSNSAPGSICFSGGLLGPDGTHRYLGKWCKRGQNSEPSSAKRSSDGDLIAVGADGRGGRIKVLRTSSQILSGGKENLLSSKRSKLGVKTSGLQSQGCLQIEHFFGRVSQ*

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