Glyma15g37410 - SoyBase

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Report for Sequence Feature Glyma15g37410

Feature Type:	gene_model
Chromosome:	Gm15
Start:	43212420
stop:	43219243
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g37410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13530	AT	Annotation by Michelle Graham. TAIR10: protein kinases;ubiquitin-protein ligases \| chr5:4345618-4354369 FORWARD LENGTH=1624	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0048589	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental growth	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005769	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: early endosome	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
PTHR22967	Panther	SERINE/THREONINE PROTEIN KINASE	JGI		ISS
PTHR22967:SF51	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G7IYR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: A subunit of NADH dehydrogenase n=1 Tax=Medicago truncatula RepID=G7IYR0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MIP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MIP5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g37410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g37410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g233600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g37410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g37410

Limit To All Plant Sequences

>Glyma15g37410.3   sequence type=transcript   gene model=Glyma15g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGCAAGACTCTAGGTGACATCTTGGATGTCCTTCCCCGAGAATGGATATCAGAAGATATGATGGAGGCACTCATGAAGAAAGGAGTTTGTCTCTCTCCTACAATATTTGAATTGGGAGACTGGGTGAAGTTTAGAAAAACTTCCATAACTCCAACAAATGGGTGGGAAGGTGATCGGCAGAAGCAGGTTTGGTTGACCTGGGCAGTCTCGTGACAGCATTGGAACAGTATTATGTGTTGATGATGATCATCCGAGTTGGATTTCCTGGACAATCCAGAGGATGGAAAGCTGATCCAGAAGAGATGGAACGTGTTCAAGAATTCAAGATTGGAGATTGGGTTCGCATTCGTCCTTTTCTTACATCTACAAAGTACGGATTAGGATCTGTGACACTGGAAAGCATCGGCATTGTATATTGTATCAGACCAGATAGTAGTCTGTTAATAGAACTGAGTTATCTTCCAACCTCATGGCATTGTGAACCGGAAGAGGTTGAGCATGTAGTTCCTTTTAGGATTGGTGATCAGATATGCGTGAAGAGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGTGTTGGAAAAATAAGAGAGATTGAGGGTGATGGTCTCTTAATAATAGATATACCAAACCGAGTTGTTCCATGGCAAGCAGATCCATCAGACATGGAGAAGGTGGAAGATTTTAAGGATGGAAATTGGGTCAGAGTTAAAGCTTCAGTGTCTGCTCCAAGATATGGGTGGGAGGATGTTACAAGAAACAGTATTGGAGTAATTCATAACTTGGAGGAGGATGGCGATATGGGTATTGCCTTTTGCTTCAGGAATGAGCTTTTTCCTTTCTCAGTCACTGATGGTGAGAAAGTTCCACGTTTTGAGGTGGGGCAAGAAATTCGTGTGATGCCATCTGTTAACCAGCCACGGCTCGGATGGTTAAACGAATCACCCTCTACTTTTGGAAAAACAGCAAGAATTGATTTGGATGGTGCACTCAATGTAAGATTATGAATTTAATTTTTATTTTTTCTAAATTTTGCACAAGATATCTTACTTATAGTCACTTTTAACAAAGTTGAACCTAATACGGTTTTCAGTGTTGCTACTTGAGTTTTTTGTTTGGATAGAAAACTTATAAAACCATGTAGACATTTCCTAGGATTTAGCCTTCATCAGAGTACACTCTTGTGTG

Coding sequences of Glyma15g37410

Limit To All Plant Sequences

>Glyma15g37410.2   sequence type=CDS   gene model=Glyma15g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGACGATGTTGAATTGGTTAAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGTAATGTGCACAATGGCATTCCTCTTCACATAGCCTTAGCTAGGGGTGCTAAGTCATGTGTTGAACTACTTCTATGTACTGGGGCAGATTGTAATTTGCAGGATGATGATGGTAACACTGCTCTCCATATAGCAGCAGAAACAGCAAAAATGATACGTGAAAATCTTGATTGGCTCATTGTATGCTTGGGAATCCTAATGCTGATTGGCAAGACTCTAGGTGACATCTTGGATGTCCTTCCCCGAGAATGGATATCAGAAGATATGATGGAGGCACTCATGAAGAAAGGAGTTTGTCTCTCTCCTACAATATTTGAATTGGGAGACTGGGTGAAGTTTAGAAAAACTTCCATAACTCCAACAAATGGGTGGGAAGGTGATCGGCAGAAGCAGGTGGGCTTTGTGCAGAGAGTTCCAGACAAAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGTATTATAGTGTTTTGGCCAATGAAGTTGTAAAAGTCGTTCTATTAGACAGGGGACAACATGTGCAGCTTAAAGAGGATGTAAAAAAGCCAAGTCTCGTGACAGCATTGGAACAGTATTATGTGTTGATGATGATCATCCGAGTTGGATTTCCTGGACAATCCAGAGGATGGAAAGCTGATCCAGAAGAGATGGAACGTGTTCAAGAATTCAAGATTGGAGATTGGGTTCGCATTCGTCCTTTTCTTACATCTACAAAGTACGGATTAGGATCTGTGACACTGGAAAGCATCGGCATTGTATATTGTATCAGACCAGATAGTAGTCTGTTAATAGAACTGAGTTATCTTCCAACCTCATGGCATTGTGAACCGGAAGAGGTTGAGCATGTAGTTCCTTTTAGGATTGGTGATCAGATATGCGTGAAGAGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGTGTTGGAAAAATAAGAGAGATTGAGGGTGATGGTCTCTTAATAATAGATATACCAAACCGAGTTGTTCCATGGCAAGCAGATCCATCAGACATGGAGAAGGTGGAAGATTTTAAGGTGGATGGAAATTGGGTCAGAGTTAAAGCTTCAGTGTCTGCTCCAAGATATGGGTGGGAGGATGTTACAAGAAACAGTATTGGAGTAATTCATAACTTGGAGGAGGATGGCGATATGGGTATTGCCTTTTGCTTCAGGAATGAGCTTTTTCCTTTCTCAGTCACTGATGGTGAGAAAGTTCCACGTTTTGAGGTGGGGCAAGAAATTCGTGTGATGCCATCTGTTAACCAGCCACGGCTCGGATGGTTAAACGAATCACCCTCTACTTTTGGAAAAACAGCAAGAATTGATTTGGATGGTGCACTCAATGTAGGTAGGCAAAGCTTGTGGAAAGTTTCTCCTGGGGATGTGGAACAACTTCCAGGATTTGAAGTTGGTGATTGGGTTTGCTCAAAACCGAGCCCGGGAAGCAGATCAAGCAGTGACTTGAATGATGTTTATGTTGCCTTTTGTGGAGAGCAAGAAAGGTGGGTAGGACCTAGTTCCCATCTTGAAAGAGTTCACAAACTCTTTGTTGAACAGAAAGTTAGAGTAAAACTTAACATAAAGGAACCAAGATTTGGGTGGTCCGGGCACACCCATGCGAGCATTGGAACGATACAAGCCATCAATGCTGATGGAAAGCTTCGAATATACACGCCAGAGGGATCAAAAGCATGGATGTTGGACCCATCAGAAGTGGAGATGGTGGAAGAGAAGGGGTTCTGCATTGGAGATTGGGTTAAGGTTAGGCCATTTGAAGTGGGAGACAATGTTAGGATCAAAGATGGATTGGTGACCCCACGGTGGGGATGGGAAATGGTGACACATTCCAGTAAGGGAAGGGTGGTAGGAGTAGATGCAAATGGCAAGGTAAGAATAAAGTTTCAGTGGAGGGAAAGGGAGGCCTTGGGTAGGAGACCCTGCTGA

>Glyma15g37410.3   sequence type=CDS   gene model=Glyma15g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATCATCCGAGTTGGATTTCCTGGACAATCCAGAGGATGGAAAGCTGATCCAGAAGAGATGGAACGTGTTCAAGAATTCAAGATTGGAGATTGGGTTCGCATTCGTCCTTTTCTTACATCTACAAAGTACGGATTAGGATCTGTGACACTGGAAAGCATCGGCATTGTATATTGTATCAGACCAGATAGTAGTCTGTTAATAGAACTGAGTTATCTTCCAACCTCATGGCATTGTGAACCGGAAGAGGTTGAGCATGTAGTTCCTTTTAGGATTGGTGATCAGATATGCGTGAAGAGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGTGTTGGAAAAATAAGAGAGATTGAGGGTGATGGTCTCTTAATAATAGATATACCAAACCGAGTTGTTCCATGGCAAGCAGATCCATCAGACATGGAGAAGGTGGAAGATTTTAAGGATGGAAATTGGGTCAGAGTTAAAGCTTCAGTGTCTGCTCCAAGATATGGGTGGGAGGATGTTACAAGAAACAGTATTGGAGTAATTCATAACTTGGAGGAGGATGGCGATATGGGTATTGCCTTTTGCTTCAGGAATGAGCTTTTTCCTTTCTCAGTCACTGATGGTGAGAAAGTTCCACGTTTTGAGGTGGGGCAAGAAATTCGTGTGATGCCATCTGTTAACCAGCCACGGCTCGGATGGTTAAACGAATCACCCTCTACTTTTGGAAAAACAGCAAGAATTGATTTGGATGGTGCACTCAATGTAAGATTATGA

Predicted protein sequences of Glyma15g37410

Limit To All Plant Sequences

>Glyma15g37410.2   sequence type=predicted peptide   gene model=Glyma15g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDDVELVKVILAAGVDVNIRNVHNGIPLHIALARGAKSCVELLLCTGADCNLQDDDGNTALHIAAETAKMIRENLDWLIVCLGILMLIGKTLGDILDVLPREWISEDMMEALMKKGVCLSPTIFELGDWVKFRKTSITPTNGWEGDRQKQVGFVQRVPDKDNLIVSFCSGEYYSVLANEVVKVVLLDRGQHVQLKEDVKKPSLVTALEQYYVLMMIIRVGFPGQSRGWKADPEEMERVQEFKIGDWVRIRPFLTSTKYGLGSVTLESIGIVYCIRPDSSLLIELSYLPTSWHCEPEEVEHVVPFRIGDQICVKRSVAEPRYAWGGETHHSVGKIREIEGDGLLIIDIPNRVVPWQADPSDMEKVEDFKVDGNWVRVKASVSAPRYGWEDVTRNSIGVIHNLEEDGDMGIAFCFRNELFPFSVTDGEKVPRFEVGQEIRVMPSVNQPRLGWLNESPSTFGKTARIDLDGALNVGRQSLWKVSPGDVEQLPGFEVGDWVCSKPSPGSRSSSDLNDVYVAFCGEQERWVGPSSHLERVHKLFVEQKVRVKLNIKEPRFGWSGHTHASIGTIQAINADGKLRIYTPEGSKAWMLDPSEVEMVEEKGFCIGDWVKVRPFEVGDNVRIKDGLVTPRWGWEMVTHSSKGRVVGVDANGKVRIKFQWREREALGRRPC*

>Glyma15g37410.3   sequence type=predicted peptide   gene model=Glyma15g37410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMIIRVGFPGQSRGWKADPEEMERVQEFKIGDWVRIRPFLTSTKYGLGSVTLESIGIVYCIRPDSSLLIELSYLPTSWHCEPEEVEHVVPFRIGDQICVKRSVAEPRYAWGGETHHSVGKIREIEGDGLLIIDIPNRVVPWQADPSDMEKVEDFKDGNWVRVKASVSAPRYGWEDVTRNSIGVIHNLEEDGDMGIAFCFRNELFPFSVTDGEKVPRFEVGQEIRVMPSVNQPRLGWLNESPSTFGKTARIDLDGALNVRL*

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