Glyma15g17060 - SoyBase

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Report for Sequence Feature Glyma15g17060

Feature Type:	gene_model
Chromosome:	Gm15
Start:	13354389
stop:	13358921
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g17060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19760	AT	Annotation by Michelle Graham. TAIR10: eukaryotic initiation factor 4A-III \| chr3:6863790-6866242 FORWARD LENGTH=408	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016607	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck	SoyBase	N/A	ISS
GO:0035145	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: exon-exon junction complex	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0328	KOG	Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF143	Panther		JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_A8DX61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DH n=1 Tax=Medicago sativa RepID=A8DX61_MEDSA	SoyBase	E_val: 0	ISS
UniRef100_UPI0001B63AF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B63AF3 related cluster n=1 Tax=unknown RepID=UPI0001B63AF3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g17060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g17060

Paralog	Evidence	Comments
Glyma09g05810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g17060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g158800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g17060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g17060

Limit To All Plant Sequences

>Glyma15g17060.2   sequence type=CDS   gene model=Glyma15g17060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGACGTCGGTGGTGCCGGCGAACCGGCGTCGCGCGGCGAACCCCGCGGAGGAGATGGACTTCGAGACGACGGAGGGCGTGAAGGCCATCGCAAGCTTCGAGGAGATGGGGATCAAGGACGATCTGCTCCGCGGAATCTACCAGTACGGCTTCGAGAAGCCCTCCGCCATTCAGCAGCGGGCCGTCACGCCCATCATTCAGGGCCGTGACGTCATCGCTCAGGCCCAATCCGGAACGGGGAAAACGTCCATGATTGCTCTCACCGTTTGCCAGGTCGTCGATACCTCCGTCAGAGAGGTTCAGGCATTGATATTGTCACCAACGAGGGAACTGGCCTCACAGACTGAGAAAGTTATATTGGCTATTGGGGATTTCATTAATATACAAGCTCATGCATGCGTTGGTGGTAAAAGTGTGGGAGAAGATATAAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGAGTTTGTGACATGATCAAAAGGAGAACATTGCGCACGAGAGCTATCAAGATGCTAGTTCTTGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCCGACCTTCAGGTTTGCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAACAAATTCATGACAGATCCAGTAAGGATCCTTGTAAAACGTGATGAATTGACATTGGAGGGCATCAAACAATTTTTTGTTGCCGTTGAAAGGGAGGAATGGAAGTTTGATACCCTGTGTGATCTTTATGATACCCTCACTATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTACTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTACAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGTGAGCTTTACATTCATCGAATTGGCCGTTCTGGACGTTTTGGAAGAAAGGGTGTTGCGATAAATTTTGTGAAGAGCGATGACATCAAGATCTTGAGAGACATTGAACAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA

Predicted protein sequences of Glyma15g17060

Limit To All Plant Sequences

>Glyma15g17060.2   sequence type=predicted peptide   gene model=Glyma15g17060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTSVVPANRRRAANPAEEMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI*

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