Report for Sequence Feature Glyma15g02690
Feature Type: gene_model
Chromosome: Gm15
Start: 1841512
stop: 1844831
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g02690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G27970 AT
Annotation by Michelle Graham. TAIR10: Exonuclease family protein | chr3:10389609-10391544 FORWARD LENGTH=357
SoyBase E_val: 5.00E-130 ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0004527 GO-mf
Annotation by Michelle Graham. GO Molecular Function: exonuclease activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG2249
KOG
3'-5' exonuclease
JGI ISS
PTHR12801 Panther
EXONUCLEASE
JGI ISS
PTHR12801:SF3 Panther
XPMC2
JGI ISS
PF00929 PFAM
Exonuclease
JGI ISS
UniRef100_B7FI33 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RNA exonuclease n=4 Tax=Medicago RepID=B7FI33_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MCY4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MCY4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g02690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g02690
Paralog Evidence Comments
Glyma13g42740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g02690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g023300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g02690
Coding sequences of Glyma15g02690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02690.1 sequence type=CDS gene model=Glyma15g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGCCGAAGCGGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACCTCGTATCATTCTGTTCATCAGCCAAGATGTGGGGTATGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGCCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGATCATAGAAAAATATGTCGCATATCTGCCCCTACTTGTCCAGGAACAAGCGCATTGCCCTATATTGATTCCCAGTTTGATTGTCAAGATTTTTCTGATGAAAACCATGCTGGCGAGGGCCCTGGAGGAGCAGTTGCAATGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTCCATACTTATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTTAGAAATGCCATGCCACTTAAGGAAGTTCGAGAAAAGCTACTGCAAATTCTACACAATGGAGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAAGCAAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTGGATTGTTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTACCGTCCGTTGATGAAAACCAACTTGGTCAGCCATTCACTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCTTATGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGATCTCAACTTCATCCGGAGGAAGACCATGGAACAATGACCCTGAGTAACAACATTGTTGGCATGCCTGATAGCTGGATATCTAGGGAACTTGACAACCTCACACCGGATGAACTTTATGCCATGTCTAGATCAGATTATAAGTGTTGGTGCTTGGATTTGATACCAAGATTGTCAGCCTGA
Predicted protein sequences of Glyma15g02690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g02690.1 sequence type=predicted peptide gene model=Glyma15g02690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQFDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLDLIPRLSA*