Report for Sequence Feature Glyma15g02531
Feature Type: gene_model
Chromosome: Gm15
Start: 1734581
stop: 1735918
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g02531
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G21330 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7507720-7508841 FORWARD LENGTH=373
SoyBase E_val: 6.00E-82 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR12565 Panther
STEROL REGULATORY ELEMENT-BINDING PROTEIN
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7IHW4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH87 n=1 Tax=Medicago truncatula RepID=G7IHW4_MEDTR
SoyBase E_val: 1.00E-141 ISS
UniRef100_I1M5E8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M5E8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g02531
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g02531
Paralog Evidence Comments
Glyma13g42900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g02531 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g022000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g02531
Coding sequences of Glyma15g02531
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g02531.1 sequence type=CDS gene model=Glyma15g02531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGGTCTAAGTTGGGATGCCTCATCACAACTTGTTGCTAACACACCGGTCTTGTGGAGCACTCAGTCTCAAGACCTTGAAGGAGACTATCATCATTCCATGCCCCACCTAAGTTCAAGTGTTCTGAATAATCAAACAGGCTATGCATATCCCAGTTCTGAAAAGGCGAGGGGCATGGTTCAGTTATCCACTATGTCTGAGATAATGAGTATGATGCCAAACACAAATCTGCCACAAAGAATTACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGAAGAGGCTTTAATATCCCAATCATGCCCATCCCTTTCGGTGAATATGAACCAAACTAGCAATTATGTAGCAGATCTCAACAAGGCCCACCAGCAACAACAACAGCTTATCAATGGCACACAAAACGGCAAGGCTACTACCTGCTCTCTTGATCAGTCAATTGATTGCTTGCTTTCAGCGACTAATAATAGCAACACAGACGCGTCTGTCGAAGATGATGGGATTTCGATGATTCTCTCTGACTGCAGAAACCTATGGAATAACTTCAGTTATGGCAGTGCAGCTTCCTCTGGTGAATCTGATAGCAATGCTTCCATTAATGCTAGAAACAGTGACATGCGGTATCCATCAGTCAGTGAGCTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGGAAGAGTGATAGATTCTGAAGTTATTTGCACAAAAAGGAGCAGTAGTTCATGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAAGGTGGTTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGATTCATAAGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGACACCTTCCTTTGAAGAACCTGATCCTGAGGTCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTTGAAGCGGTGGAAAAGCCAAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACAGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCAGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTGGAAAATCTAGGCAATAAGCTTGACACAATGAATTGTCCTCCCACTAACATAGACTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATATTCCAAGGGTTGA
Predicted protein sequences of Glyma15g02531
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g02531.1 sequence type=predicted peptide gene model=Glyma15g02531 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDGLSWDASSQLVANTPVLWSTQSQDLEGDYHHSMPHLSSSVLNNQTGYAYPSSEKARGMVQLSTMSEIMSMMPNTNLPQRITATMPVKSGAAGASWEEALISQSCPSLSVNMNQTSNYVADLNKAHQQQQQLINGTQNGKATTCSLDQSIDCLLSATNNSNTDASVEDDGISMILSDCRNLWNNFSYGSAASSGESDSNASINARNSDMRYPSVSELDESVSQSFSDQYLSQGRVIDSEVICTKRSSSSCFSIAQNSSATEGGFRLISETSPKSKRPRWIHKHPGSSNINFQQPNSSVTPSFEEPDPEVIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIDFSFNPSFPIQTHFPIQNPSSHIQYSKG*