Glyma14g40450 - SoyBase

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Report for Sequence Feature Glyma14g40450

Feature Type:	gene_model
Chromosome:	Gm14
Start:	49380034
stop:	49383640
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g40450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75710	AT	Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein \| chr1:28428806-28431128 FORWARD LENGTH=462	SoyBase	E_val: 3.00E-176	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_B9R880	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R880_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MC45	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MC45_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g40450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g40450

Paralog	Evidence	Comments
Glyma17g37710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g40450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g218700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g40450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g40450

Limit To All Plant Sequences

>Glyma14g40450.1   sequence type=CDS   gene model=Glyma14g40450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTCCTAACTTCCTTGCCTGAACAGTTCTCCAGTACCCCCAAACGCCACAAACGTAAGCCACAACAACAACAACAGAAACAAAAGCAAAAGCAAAAGCAAAAACAGAAACAGAAACCAGCCTCTTCATGGGACCAAATCAAGAACCTCTTAACCTGCAAACAGATGGAAGAGTCGAGAGTGCACGACCCTTCGAAAATAACTGGGTACTCGAAGCTAGGGTCTTCTTGCAGCTCCATATGCAGCTTCAGAGATGTGGTTCATGGGAACACACGTGTTGTGCATAGGTCTGATAACTCCTCACCAGAGAGTAGTTCTCTGGGTCAGGAAACTAATGGGTTACTCACTAGGAAACCTGTTACTACTACTACTACTCGTTCCGCAAAATCAAACGGCGGAGCAACCTGCACGTCATCATCATCATCTTCCAGAGGCATGCAATTCAGGAAGCTTTCTGGGTGTTATGAATGTCACATGATCATTGACCCTAGCAGGTTACCAATTGCGAGGAGCACTGTGTGTGCTTGCTCTCACTGTGGTGAGGTCTTCCCTAAAATGGAAAGTTTGGAGCTTCATCAAGCTGTTCGTCATGCCGTTTCGGAGCTAGGTCCGGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAATCGAGCTGGTTGAAGAAGGACAACCCGATTTGCAAGATCGAACGGATACTAAAAGTGCACAACACCCAACGCACCATCCAACGGTTTGAGGAGTGCAGGGACACCGTAAAGAACCGTGCGCTGGGCAGCACCAAGAAAAACCCCAGGTGCGCAGCCGACGGCAACGAACTCTTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGTGCACGTGGCTCTTCCTCCCTCTGCGCCTCCGTACCCGGCTGCAGCGTCTGCACCATCATCAGGCACGGTTTCCAAGGCGGGTGCGGCGGCGGTGGAGACCACGCGAGGGCGAAGGGCGTGAGAACCACCGCCAGCAGCGGTCGGGCCCACGACTCTGTGGTGTGCGGTGACGCCACGCGCAGGGCCATGCTGGTGTGTCGCGTGATCGCGGGCAGAGTGAAGCGCGTGGTGGAGGACGCGCCGTCGGAGGAGGAACACGTGTCGTATGATTCCGTTGCGGGGTACGCTGGAATCTACTCGAATCTCGAGGAGCTTGTTGTTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTGGTCATTTACAAAGTTCCTTTGTGTTAG

Predicted protein sequences of Glyma14g40450

Limit To All Plant Sequences

>Glyma14g40450.1   sequence type=predicted peptide   gene model=Glyma14g40450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLTSLPEQFSSTPKRHKRKPQQQQQKQKQKQKQKQKQKPASSWDQIKNLLTCKQMEESRVHDPSKITGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETNGLLTRKPVTTTTTRSAKSNGGATCTSSSSSSRGMQFRKLSGCYECHMIIDPSRLPIARSTVCACSHCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKNRALGSTKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCASVPGCSVCTIIRHGFQGGCGGGGDHARAKGVRTTASSGRAHDSVVCGDATRRAMLVCRVIAGRVKRVVEDAPSEEEHVSYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVPLC*

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