Glyma14g08280 - SoyBase

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Report for Sequence Feature Glyma14g08280

Feature Type:	gene_model
Chromosome:	Gm14
Start:	6321390
stop:	6324471
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma14g08280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19360	AT	Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferase family protein \| chr1:6690672-6692211 REVERSE LENGTH=428	SoyBase	E_val: 0	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0080147	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell development	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
PTHR10994	Panther	RETICULON/NOGO	JGI		ISS
PTHR10994:SF3	Panther	HISTONE H4 - RELATED	JGI		ISS
PF03407	PFAM	Nucleotide-diphospho-sugar transferase	JGI		ISS
UniRef100_I1M8F0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M8F0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma14g08280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma14g08280

Paralog	Evidence	Comments
Glyma17g36770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma14g08280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g076600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma14g08280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma14g08280

Limit To All Plant Sequences

>Glyma14g08280.1   sequence type=CDS   gene model=Glyma14g08280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGGGTTCGTAGAGACGCATTGCTGACGAGAGATAAAGGCCAATCATCGGTCCGATTTCGAATCGTCGTCGCCGTCGTGATCGGCGTTCTCCTCGGCTGCGTCTTTGCCTTCTTCTCCTCCGCTCCCACTCCTCTTCACATTCCCTACCCTATTAAGATGGTTTCATCTGCATGTGAATCGCCAGAACAAGTTAATGCGCTTAAAGTTGATATTCTATCAGCGAAAGTGAAAAATTCTGAGCTGAAGAAACGGGTCAAGGATCTTATGGAGAAGCTGCGTCTGGCCGAGCAAGGAAAGGGTCATGCTCAGGAACAGTTTGTTGTGCTTGGTGAGAGCCACAAGGCTGGGCCTTTTGGAACTGTCAAGGGTCTCAGAACCAATCCACCTGTCATTCCTGATGAATCTGTGAACCCCAGATTGACCAAGATCTTGGGGGAAGTTGCTATTTATAAAGAACTTATTGTTGCTCTCGCTAACTCTAATGTGAAGGAGATGTTGCAGCTATGGTTCACCAACATCAAGAGGGTTGGCATACCTAATTATTTGGTTGTTGCCTTAGATGATAACATTGAAGAGTTCTGCAAATCCAATGATGTTCCTGTGTATAGAAGGGATCCTGATCAAGGTGTTGATGTGGTCGGTAAGAGTGGTGGTAACCATGCTGTTTCGGGATTGAAATTTCGTATTTTGAGAGAATTTCTGCAACTGGGTTACAGTGTTCTTCTCTCGGATGTTGATATTGTGTACTTGCAGAACCCCTTTGATTATCTCTATAGGGATTCAGATGTGGAGTCAATGTCTGATGGTCACAATAATAAGACAGCTTACGGGTATAATGATGTCTTTGATGAACCCTCGATGGGTTGGGCTCGGTATGCTCATACCATGAGAATATGGGTTTATAACTCTGGTTTCTTTTATATAAGGCCTACTCTTCCTTCAATTGAGCTCTTGGATCGTGTTGCAACTCGGCTTTCCAATGACCCAAAATCATGGGATCAGGCAGTTTTTAATGAGGAGCTCTTTTTCCCTTCACATCCTGGTTATGATGGACTTCACGCTGCAAAAAGGACGATGGATATGTACCTTTTTATGAACAGTAAGGTTCTCTTTAAGACTGTAAGAAAAGATGCTAAACTCAAGAAGCTGAAGCCAGTGATCGTACATGTTAATTACCATCCTGATAAGTTTGCAAGGATGAAGGCAATAGTTGAGTTTTATGCCAATGGGAAACAGGATGCGCTGGATCATTTCCCAGATGGTTCTGACTGA

Predicted protein sequences of Glyma14g08280

Limit To All Plant Sequences

>Glyma14g08280.1   sequence type=predicted peptide   gene model=Glyma14g08280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGVRRDALLTRDKGQSSVRFRIVVAVVIGVLLGCVFAFFSSAPTPLHIPYPIKMVSSACESPEQVNALKVDILSAKVKNSELKKRVKDLMEKLRLAEQGKGHAQEQFVVLGESHKAGPFGTVKGLRTNPPVIPDESVNPRLTKILGEVAIYKELIVALANSNVKEMLQLWFTNIKRVGIPNYLVVALDDNIEEFCKSNDVPVYRRDPDQGVDVVGKSGGNHAVSGLKFRILREFLQLGYSVLLSDVDIVYLQNPFDYLYRDSDVESMSDGHNNKTAYGYNDVFDEPSMGWARYAHTMRIWVYNSGFFYIRPTLPSIELLDRVATRLSNDPKSWDQAVFNEELFFPSHPGYDGLHAAKRTMDMYLFMNSKVLFKTVRKDAKLKKLKPVIVHVNYHPDKFARMKAIVEFYANGKQDALDHFPDGSD*

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