Report for Sequence Feature Glyma13g38140
Feature Type: gene_model
Chromosome: Gm13
Start: 39039557
stop: 39042119
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g38140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G51070 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18928018-18929513 FORWARD LENGTH=226
SoyBase E_val: 2.00E-69 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0019344 GO-bp
Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR23042 Panther
CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
JGI ISS
PTHR23042:SF22 Panther
BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_G7IKM3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor ILR3 n=1 Tax=Medicago truncatula RepID=G7IKM3_MEDTR
SoyBase E_val: 1.00E-104 ISS
UniRef100_I1M411 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M411_SOYBN
SoyBase E_val: 9.00E-169 ISS
Expression Patterns of Glyma13g38140
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g38140
Paralog Evidence Comments
Glyma12g32280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g38140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g305500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g38140
Coding sequences of Glyma13g38140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g38140.1 sequence type=CDS gene model=Glyma13g38140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGACGTGAATTCCTCAGGTGGTGCCTCCGATTGGCTTTATGATTATGGCTTTGATATTCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCCGTTGGGGGCCTCAGAGTCACAACTTCAAGGGTCCCTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACAGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTACGAAGGGATAAACTAAATGAGAGGTTTCTGGAATTGAGTTCCATCCTGGAGCCTAGTAGGCAGCCCAAATCAGACAAAGTTGCAATATTAAGCGATGCGGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCAAGAGGCTGAAGGAAATGAATGATGAACTACAGGCAAAAGTTAAAGAATTGAAGGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGTTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAAGTAAAAGTGGCAAATATACAACCCAGCTTCCTGCCTCAAGCCCCAGATGCTAAAGGACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACATCAAAGGATCACCTTCTTCGACCTCCAGTTGCATAA
Predicted protein sequences of Glyma13g38140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g38140.1 sequence type=predicted peptide gene model=Glyma13g38140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDVNSSGGASDWLYDYGFDIPVAGSDFMASDSGGFRWGPQSHNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPSRQPKSDKVAILSDAARVVIQLRNEAKRLKEMNDELQAKVKELKGEKNELRDEKNRLKEEKEKLEQQVKVANIQPSFLPQAPDAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA*
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