Report for Sequence Feature Glyma13g27970
Feature Type: gene_model
Chromosome: Gm13
Start: 31072785
stop: 31074650
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g27970
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06150 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861971-1863755 REVERSE LENGTH=594
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_Q9M8K3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F28L1.9 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M8K3_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233C48B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C48B related cluster n=1 Tax=unknown RepID=UPI000233C48B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g27970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g27970
Paralog Evidence Comments
Glyma15g11060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g27970 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g208900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g27970
Coding sequences of Glyma13g27970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g27970.1 sequence type=CDS gene model=Glyma13g27970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCAGAAAAGGTAGAGAGCCACAGGGCTCTTTGGTCTTCTTCTATTCATTGGCGTTTTGGGTTGCTCACTGCTCTTGTTTTGGGTGGCATGGTTGTGGTTTGGACCATTGATGGCTTCACTGTTAGGAACGTTATTGAAGCTTGGAGCTGGAGGTATCGTCAAGATTCTTTTTCTCTAAGGTCTCATTCTCCTAATTCCACTCTCTCCTGTCATCAAAATCTCACTTTGAGTAATTATAGCTCCCCATATGGTCCACTTAGTTTGAATCAAAACCAAACCAATGCTACTACCCTTTTTGGTCCCCACAATCTTGTGAACATCACATTGTCTGAGCACAGTGAAACTGTTTCTGCTAAGAACTATAGTAGTAGTGGTGTCTCTGATAAGCTTGACACAAAAACCCCACTGAAGCCTGAAGTCAAGGGGCATTCAACTTGGCTTTCAAGTGAATTAGAGCCAAACTTGACTTCAAGTCTTCTAGCAAGATGGTTAGCTCCTGGGGGAGAACCTTGTAAAGATTCTAAGACAGTGGGAATATCAATTCCTGGGTTGGATGATGGGAAACTGATAGAGCTATCAGCTGGGGAAGTGCATGAGTTTGGTTTTCAGGCATTGGATGATTTAGGGAAACCTCGTTGTTTAGGTGGGGATTACTTTGAGACTGATCTTGCAGGGGAGTCATGGAAATCTAGGCCATTGGTGAAAGATTTCAGTAATGGTTCTTACTCTATTTCCCTGCAAGTTCATCCTGATTTTGTTGGGGTTTACAATCTGACTGTAATTCTGCTTTATAGACACTTTGAAGGTCTGAAGTTCACTCCATGGAGATTTGTCTACGATCGAGTGGTTTGGAATGTTGCAATCAGGTTCTACAAAAGCAGTGCTCAGTTACCAGAACTTGAGACTTGTAAAGCTTCTGATTTTGGCAAGGATGTGTGGTGTGGAAGGTGGACAAGGCATGCGAAGAATGATGGCTGCCAAATAGGTAATGATGGTAGGTACAGATGCTTGGCACCAGATTTTCCTTGTAATGCTCCATGGTGTGATGGTTCGTTGGGAGTTATAGAGAGTAATGGTTGGGTGTATTCAACTCACTGCTCATTCAAGATGTTTTCAGCTGAGTCTGCTTGGAAGTGCTTGAAGAATAGATGGATTTTCTTCTGGGGTGATTCAAATCATGTTGATACAATACGTAATATGCTCAATTTTGTCTTAGATTTGCCCAATATACATTCTGTCCCTAGGAGATTTGACATGAACTTTTCGAACCCAAAAGACCCTTCTCAAACAGTTAGGATCACTAGCATTTTTAATGGGCATTGGAATGAAACACAAAACTATCTAGGATTGGATTCTCTGAGAGATAAAGGGTTTCAAAATCTGTTGAAGAAGTACTTCTCAGAAGACACAATCCCAGATACTGTGATCATGAACTCAGGATTGCATGATGGCGTTCACTGGCGTAATATAAGAGCATTTTCTGCTGGAGCAGACTATGCAGCATCATTCTGGGGAGATGTTATGATCTCAGTGAAGCAAAGGGGGTTAGCTTGGCCAAGAGTCTTTTATCGTTCCACAGTTGCAACTGGGGGATACGCAAGATCACTAGCATTTAATCCTTACAAAATGGAGGTGTTCAATGGAGTGCTCATAGAGAAATTGAAGAAAGCTGGCATCATCACTGGGGTGATTGATGACTTTGATATGACATTTTCATGGCATTTTGATAACCGGTGTAATGATGGAGTTCACTATGGAAGGGCTCCTGCAAAGATGAAGTGGCGAGATGGCAAAATTGGTCATCAGTATTTTGTGGATCTCATGTTAGCTCATGTTCTGCTCAATGCACTATGTGCAAGATGA
Predicted protein sequences of Glyma13g27970
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g27970.1 sequence type=predicted peptide gene model=Glyma13g27970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPEKVESHRALWSSSIHWRFGLLTALVLGGMVVVWTIDGFTVRNVIEAWSWRYRQDSFSLRSHSPNSTLSCHQNLTLSNYSSPYGPLSLNQNQTNATTLFGPHNLVNITLSEHSETVSAKNYSSSGVSDKLDTKTPLKPEVKGHSTWLSSELEPNLTSSLLARWLAPGGEPCKDSKTVGISIPGLDDGKLIELSAGEVHEFGFQALDDLGKPRCLGGDYFETDLAGESWKSRPLVKDFSNGSYSISLQVHPDFVGVYNLTVILLYRHFEGLKFTPWRFVYDRVVWNVAIRFYKSSAQLPELETCKASDFGKDVWCGRWTRHAKNDGCQIGNDGRYRCLAPDFPCNAPWCDGSLGVIESNGWVYSTHCSFKMFSAESAWKCLKNRWIFFWGDSNHVDTIRNMLNFVLDLPNIHSVPRRFDMNFSNPKDPSQTVRITSIFNGHWNETQNYLGLDSLRDKGFQNLLKKYFSEDTIPDTVIMNSGLHDGVHWRNIRAFSAGADYAASFWGDVMISVKQRGLAWPRVFYRSTVATGGYARSLAFNPYKMEVFNGVLIEKLKKAGIITGVIDDFDMTFSWHFDNRCNDGVHYGRAPAKMKWRDGKIGHQYFVDLMLAHVLLNALCAR*