Glyma13g26040 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g26040

Feature Type:	gene_model
Chromosome:	Gm13
Start:	29263416
stop:	29265317
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g26040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12380	AT	Annotation by Michelle Graham. TAIR10: annexin 8 \| chr5:4009223-4010687 FORWARD LENGTH=316	SoyBase	E_val: 6.00E-31	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding	SoyBase	N/A	ISS
KOG0819	KOG	Annexin	JGI		ISS
PTHR10502	Panther	ANNEXIN	JGI		ISS
PTHR10502:SF47	Panther	OS09G0453300 PROTEIN	JGI		ISS
PF00191	PFAM	Annexin	JGI		ISS
UniRef100_D6QX29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Annexin 14 n=2 Tax=Glycine max RepID=D6QX29_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D6QX29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Annexin 14 n=2 Tax=Glycine max RepID=D6QX29_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g26040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g26040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g191200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g26040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g26040

Limit To All Plant Sequences

>Glyma13g26040.3   sequence type=transcript   gene model=Glyma13g26040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCACGTGGCATGCACATACAAGTACAACCTGCGTTACACATCACCATCAACTCAATGCATAGAAACTTCAGTTGTTCTAAAGACTTTTTGAGCTTTGAAGCCAACCCTATATGTAGCAATTAGTGAGTGATGATGAGTTCATCCTTTGCCTTTTGTCTTTCCATGGAATGCACAAAAACTAAAAAGTAGGAATATCCCTGCCTTACCCTCCAAGTAATTGTTGCTTAAATACATATGGTTGGTGGACTATATATTTACTTGAACCTGAACCAAAACAAAACCATTAATTCCATTTGTTTCCTTCATATGGCTAACAACATTCTTACCATGACAAACCTCAATTTCGAACTTGATTGCAAGAGAACTCATGATTCTTTGGGGAGTTTGAGTCAATTGATCACATCTCTGGCTTGTGTAACCCACCATGAAAGACAACAACTCAGGGAGACCTTTAAGGCAGTGAATGGAGAAGACTTGATAAGTCATCTTCAAAGATATGAAGATGCGTTTTATTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGAACTGTTCTGCTATTTCCTTGTGGATGCTTGACACACATGACAGGGATGCTGTTGTGGCTAGAGAAGCTCTCCAACAAGATGAGACCAATTTCAAGGCTCTTGTGGAGATTTTTGTGGGTAGAAAATCAAGTCATGTTCTTCTCATCTCACAGGCCTACCAGAAAATGTTCAAAAGACACTTGGACCAAGATATTATCAATTTGGACCCTCCACACCCCTTTCAAAAGATTATTGTGGCATTGGCTGCATCACACAAAGCTCATCAAGCAGATGTCAACCATCATATATCCAAGTGTGATGCTAGGAGGCTCTATGAGACTGGGGAGGGAAGCTTAGGAACTGTAATTGAAGCTGTTGTGTTAGAAATTTTAAGCAAGAGGAGCATTCCCCAACTGAAGCTAACATTTTTTAGTTATAAACACATTTATGGACATGACTACACAAAGTCTATCAAGAGGGGGAAATACGGTCAATTTGGTAAAGCTTTAAAGGTGGTTGTGAAATGCATTTGTAATCCAGCACACTATTATGCAAAGGTAATCATTTTAGCTTCTTTTTTTTCCTTCACAGAACCAACTGGCATAGGGTAGGGTGCAGTTGTTTGTTCCTAACTTCTTGTTACAAATCTTAAAACAGTAAATATAGTTTAGGAAGAGATTTTATTT

Coding sequences of Glyma13g26040

Limit To All Plant Sequences

>Glyma13g26040.2   sequence type=CDS   gene model=Glyma13g26040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGTGGACTATATATTTACTTGAACCTGAACCAAAACAAAACCATTAATTCCATTTGTTTCCTTCATATGGCTAACAACATTCTTACCATGACAAACCTCAATTTCGAACTTGATTGCAAGAGAACTCATGATTCTTTGGGGAGTTTGAGTCAATTGATCACATCTCTGGCTTGTGTAACCCACCATGAAAGACAACAACTCAGGGAGACCTTTAAGGCAGTGAATGGAGAAGACTTGATAAGTCATCTTCAAAGATATGAAGATGCGTTTTATTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGAACTGTTCTGCTATTTCCTTGTGGATGCTTGACACACATGACAGGGATGCTGTTGTGGCTAGAGAAGCTCTCCAACAAGATGAGACCAATTTCAAGGCTCTTGTGGAGATTTTTGTGGGTAGAAAATCAAGTCATGTTCTTCTCATCTCACAGGCCTACCAGAAAATGTTCAAAAGACACTTGGACCAAGATATTATCAATTTGGACCCTCCACACCCCTTTCAAAAGATTATTGTGGCATTGGCTGCATCACACAAAGCTCATCAAGCAGATGTCAACCATCATATATCCAAGTGTGATGCTAGGAGGCTCTATGAGACTGGGGAGGGAAGCTTAGGAACTGTAATTGAAGCTGTTGTGTTAGAAATTTTAAGCAAGAGGAGCATTCCCCAACTGAAGCTAACATTTTTTAGTTATAAACACATTTATGGACATGACTACACAAAGTCTATCAAGAGGGGGAAATACGGTCAATTTGGTAAAGCTTTAAAGGTGGTTGTGAAATGCATTTGTAATCCAGCACACTATTATGCAAAGATACTGTACTCAAGCATCAAAGGGGAAACAAGGGACAGAAGAGTTTTGGCACGAACATTGGTAAGCAGGGCTGAGATAGACATAGATGAAATTAGAAGGGTTTTCAAAGAAAAGTATGGGAAGGAACTTGCTGATGCTATATGTGAAGGCTTTCCATCTGGTGACTACTACAGAGACTTTCTTGTTGCCTTGGCTACAAGATCTAAGTAG

>Glyma13g26040.3   sequence type=CDS   gene model=Glyma13g26040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGTGGACTATATATTTACTTGAACCTGAACCAAAACAAAACCATTAATTCCATTTGTTTCCTTCATATGGCTAACAACATTCTTACCATGACAAACCTCAATTTCGAACTTGATTGCAAGAGAACTCATGATTCTTTGGGGAGTTTGAGTCAATTGATCACATCTCTGGCTTGTGTAACCCACCATGAAAGACAACAACTCAGGGAGACCTTTAAGGCAGTGAATGGAGAAGACTTGATAAGTCATCTTCAAAGATATGAAGATGCGTTTTATTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGAACTGTTCTGCTATTTCCTTGTGGATGCTTGACACACATGACAGGGATGCTGTTGTGGCTAGAGAAGCTCTCCAACAAGATGAGACCAATTTCAAGGCTCTTGTGGAGATTTTTGTGGGTAGAAAATCAAGTCATGTTCTTCTCATCTCACAGGCCTACCAGAAAATGTTCAAAAGACACTTGGACCAAGATATTATCAATTTGGACCCTCCACACCCCTTTCAAAAGATTATTGTGGCATTGGCTGCATCACACAAAGCTCATCAAGCAGATGTCAACCATCATATATCCAAGTGTGATGCTAGGAGGCTCTATGAGACTGGGGAGGGAAGCTTAGGAACTGTAATTGAAGCTGTTGTGTTAGAAATTTTAAGCAAGAGGAGCATTCCCCAACTGAAGCTAACATTTTTTAGTTATAAACACATTTATGGACATGACTACACAAAGTCTATCAAGAGGGGGAAATACGGTCAATTTGGTAAAGCTTTAAAGGTGGTTGTGAAATGCATTTGTAATCCAGCACACTATTATGCAAAGGTAATCATTTTAGCTTCTTTTTTTTCCTTCACAGAACCAACTGGCATAGGGTAG

Predicted protein sequences of Glyma13g26040

Limit To All Plant Sequences

>Glyma13g26040.2   sequence type=predicted peptide   gene model=Glyma13g26040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGGLYIYLNLNQNKTINSICFLHMANNILTMTNLNFELDCKRTHDSLGSLSQLITSLACVTHHERQQLRETFKAVNGEDLISHLQRYEDAFYSPSSSSSSSSSSSSSSSSSSMNCSAISLWMLDTHDRDAVVAREALQQDETNFKALVEIFVGRKSSHVLLISQAYQKMFKRHLDQDIINLDPPHPFQKIIVALAASHKAHQADVNHHISKCDARRLYETGEGSLGTVIEAVVLEILSKRSIPQLKLTFFSYKHIYGHDYTKSIKRGKYGQFGKALKVVVKCICNPAHYYAKILYSSIKGETRDRRVLARTLVSRAEIDIDEIRRVFKEKYGKELADAICEGFPSGDYYRDFLVALATRSK*

>Glyma13g26040.3   sequence type=predicted peptide   gene model=Glyma13g26040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGGLYIYLNLNQNKTINSICFLHMANNILTMTNLNFELDCKRTHDSLGSLSQLITSLACVTHHERQQLRETFKAVNGEDLISHLQRYEDAFYSPSSSSSSSSSSSSSSSSSSMNCSAISLWMLDTHDRDAVVAREALQQDETNFKALVEIFVGRKSSHVLLISQAYQKMFKRHLDQDIINLDPPHPFQKIIVALAASHKAHQADVNHHISKCDARRLYETGEGSLGTVIEAVVLEILSKRSIPQLKLTFFSYKHIYGHDYTKSIKRGKYGQFGKALKVVVKCICNPAHYYAKVIILASFFSFTEPTGIG*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain