Glyma13g24150 - SoyBase

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Report for Sequence Feature Glyma13g24150

Feature Type:	gene_model
Chromosome:	Gm13
Start:	27478301
stop:	27481706
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g24150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45980	AT	Annotation by Michelle Graham. TAIR10: WUSCHEL related homeobox 8 \| chr5:18648921-18650698 FORWARD LENGTH=325	SoyBase	E_val: 3.00E-59	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0030010	GO-bp	Annotation by Michelle Graham. GO Biological Process: establishment of cell polarity	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0090451	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon boundary formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF107	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
UniRef100_B8YI24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WOX9-like protein n=1 Tax=Phaseolus coccineus RepID=B8YI24_PHACN	SoyBase	E_val: 1.00E-140	ISS
UniRef100_UPI000233D4A9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D4A9 related cluster n=1 Tax=unknown RepID=UPI000233D4A9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g24150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g24150

Paralog	Evidence	Comments
Glyma07g32430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g24150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g172700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g24150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g24150

Limit To All Plant Sequences

>Glyma13g24150.1   sequence type=CDS   gene model=Glyma13g24150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTTCCAACAGACATTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATAATCCCCACAACCAATGGCATCATGACATCAACTCCTCTATAGTTTCCACCGGTTGCCAAAGAAGCCCTTATGCTAATTCAGGAGGTGACGAGAGAACCCCAGAACCAAAGCCAAGATGGAACCCAAAACCGGAGCAAATCCGCATCCTGGAAGCCATCTTCAACTCAGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAATCCAGGAGCAAGCACAAGCTTCGTCACTTCCAAAACACAAAGAACCAAAATAATGCAGAAGCACAACAACAGCACAGGGTTGATGCTTCTTCTTCTCTCTCTCAGACCACACCACTTTCATCCTCATCCTCTTCATCTGACAAATCATCTTCAAAGGAATTAGCATACAACCCCAATGGATTCTCCTTTGGCTTTTCAAATGTCAATGATGTAGCAGTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTTCACCCTCACAACCACAGTGACAACAATTTGCTACCACAAGAGCCTTTCTCCTTTACCATGCACAACAACAATGGGCAAGGTTTTGTTGATAATAATACCATAACAACGCTTGGGTTTTCTGTCCCTCAATTCTCCAGCAACATGATGCAATCTCAACTTCAGTGTCAACAAAATGTTGGATCTTGCACTAGTCTTTTGCTGAGTGAGATCATGAGTCATGGAACCTTCTCAAAGAAAGATCAAGACAAGGCATTGAAGATAATGCATCCACAACTTAGTAATTTCCCTCTTACTTCAACTCCAACCACAATCATTGCTCCTCCAATCTCAACCGTTCTGGATCCAAGCCCCATCACTCAACTTGAAGGTGTTGGTGAGGTTGCAGCAGGAGATAGGGCAAAATGTATTACAGTGTTCATTAACGATGTTGTATTTGAGATTGTGATGGGACCCTTCAACGTGCGCCAAGCCTTTGGAGATGAAGCTGTGCTTATCCACTCTTCTGGTAACCCTGTTCCCACCGATGAGTGGGGCATCACTCTCCACCCACTGCACCATGGTGCTTGTTACTATCTGGTTTAA

Predicted protein sequences of Glyma13g24150

Limit To All Plant Sequences

>Glyma13g24150.1   sequence type=predicted peptide   gene model=Glyma13g24150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSNRHWPSMFKSKPCNNPHNQWHHDINSSIVSTGCQRSPYANSGGDERTPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHFQNTKNQNNAEAQQQHRVDASSSLSQTTPLSSSSSSSDKSSSKELAYNPNGFSFGFSNVNDVAVPNSPTASVNQTYFHPHNHSDNNLLPQEPFSFTMHNNNGQGFVDNNTITTLGFSVPQFSSNMMQSQLQCQQNVGSCTSLLLSEIMSHGTFSKKDQDKALKIMHPQLSNFPLTSTPTTIIAPPISTVLDPSPITQLEGVGEVAAGDRAKCITVFINDVVFEIVMGPFNVRQAFGDEAVLIHSSGNPVPTDEWGITLHPLHHGACYYLV*

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