Report for Sequence Feature Glyma12g09990
Feature Type: gene_model
Chromosome: Gm12
Start: 7757018
stop: 7764338
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g09990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G27230 AT
Annotation by Michelle Graham. TAIR10: transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650
SoyBase E_val: 2.00E-114 ISS
GO:0006342 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing
SoyBase N/A ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009855 GO-bp
Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry
SoyBase N/A ISS
GO:0009887 GO-bp
Annotation by Michelle Graham. GO Biological Process: organ morphogenesis
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0010014 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem initiation
SoyBase N/A ISS
GO:0010051 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation
SoyBase N/A ISS
GO:0010073 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem maintenance
SoyBase N/A ISS
GO:0010078 GO-bp
Annotation by Michelle Graham. GO Biological Process: maintenance of root meristem identity
SoyBase N/A ISS
GO:0010479 GO-bp
Annotation by Michelle Graham. GO Biological Process: stele development
SoyBase N/A ISS
GO:0016569 GO-bp
Annotation by Michelle Graham. GO Biological Process: covalent chromatin modification
SoyBase N/A ISS
GO:0031047 GO-bp
Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048364 GO-bp
Annotation by Michelle Graham. GO Biological Process: root development
SoyBase N/A ISS
GO:0048439 GO-bp
Annotation by Michelle Graham. GO Biological Process: flower morphogenesis
SoyBase N/A ISS
GO:0048519 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0042803 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity
SoyBase N/A ISS
PTHR13902 Panther
SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED
JGI ISS
PTHR13902:SF5 Panther
MAPKKK
JGI ISS
UniRef100_B9RIZ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein, putative n=1 Tax=Ricinus communis RepID=B9RIZ8_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233CCEE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CCEE related cluster n=1 Tax=unknown RepID=UPI000233CCEE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g09990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g09990
Paralog Evidence Comments
Glyma11g18290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g09990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g094500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g09990
Coding sequences of Glyma12g09990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g09990.2 sequence type=CDS gene model=Glyma12g09990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTTTCGCTCAAAGAGGCTTTGAGGACTCTGTGCTCAAGGAATCGCTGGTCTTATGCCGTGTTCTGGAAGATCGGTTGTAATAATTCCAAGTTGTTAATCTGGGAAGATTACTACTACGAACCCTTGCCCTCTCCTTTCCCTCCACGAACTGTTGGGAGGTCTAATTTTCCTTACCAAGATGGGGAAGGATGTTGGTTTTCTTCTGAGTCTCAGCTAGGGATTCAGGAGGAGGACAGAGTCCGTGTATTGATCAACAAAATGATGGTGAATAATTCAGTCAGTATTGCTGGAGAAGGGATAGTTGGACGGGCAGCATTTACAGGAAACTATCAGTGGATTCTTTTGAACAATTTCACTAGAGATGCTTATCCACCAGAGGTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAGACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTTCTTTCTCGCCGATAATGGAAGATATAGGATTTGTGAATGATGTAAAGAACTTTATCTTGCAATTGGGATGTGTACCTGGTGCCCTTCTATCTGAAGACTATTCAGCAAAAGTTTCTAATGAAAAATTCGCTGGACCTGTGACCGTTGATCCACCTGTCATTACTTCAAACTGCACTCCCTCGGTAGCTAATGGTTCCAACCAACTTACTAATTCTCCTCTTGCTTCAAGGCCTGTTGCTCAGCCACCTCATCCTCTAAGGGGAGGAATAAATAATTACCAGGGTTCTTTATTGACACCTCAAGCCTATAACCCGAACCAGGTATTTGATGGCATTTGCCAACCAAAGGCTCATTCAATGATCAAAACAAATGTCTGTGGCCAACCAAAGAAGACCATTGTTGAGGCTGAAGCTAAGGTGATACCTACAAATTTTGATTCATGTCTGCAACAACATTCTGTTTATAATGCTAGATCTGCATTCAATGAGTTATCTAGTTTCAATCAATCAAATCTGAGTGACGGCAGCCTTAAATATATGGAACAACAAACATCAGGTGTTGGGAGACAGAGTCAAGTTATTCCTAACGTGAATCCATCAAGTGCCTTAAATATGCCTCGGCTGAAAATCGATGGAGGTAAAATTCTTGAACAGAATCAGAGTTCTAGTGACAGTTCACTACTCGGAGGAATCCCAATATGTAGTGGGAGTAATCTTTTGAGGACAAATATGATTAACTGCTCACTTTCAAATCCTCCCAAAGTATCCACTAACACTTCTGATTTTTCTGGAATGTACAAGGTTGGGTTTGGACTCCAAAGTAACAATACAACAACTAATGCTGTGCTTTGTTCTGTGCCTAATTTCACTAATCAATCAGTTAGCAATCACATGAATCTAGAAGGCTCTGGTCAGAAAAGTCTTTCCATTGATTTAAAGCAAGTGTGGGATGCCTTTGCGTCAACTGATCAAAGGATAGATGATGATTTGCTTCAGGCCGCCCTTAAGATTCCATCTCTTCATCTGGAGGAGCATGTGCCTATGGGTGATCACATCTCTGGTTTTGTTCAAGATTGCCTCAGTAAAGATCTTACTAGTCAACATATGATGAAAATGAATGTTAAGCATGCAGAAGCCGATGCTCAACTTCCATCAGGTGATGACCTCTTCGATGTTTTGGGCGTGGATTTGAAAAGGAGACTACTCAATGGAAACCGGAATGAGTTGCTTGCCACTGATTCAGATGCCATCACAGAACATCTAGATAAAAAGGCAACACACATGAATTTGCAAGGTGTAGGTCCTAATAATAGTTATTCAGTTAATGAAGCTATATCAGAAAGTGGCATCTTCTCTGGAACGGACACAGACCACCTTTTAGATGCTGTGGTTTTAAAAGCTCAATCTGCTGCAAAACAGAATTCTGATGAAATGTCATGCAGGACAACATTGACAAGGATTAGTACCGCCTCAATTCCTTCTCCTGTCTGCAAGCAAGTTATGCCTGATCATGTTGCCCCGAGGGGATTGTTTGATTTTCCTAAGACCGGAGTTAAAACAGCTTCTGCAGAAACAAGTTCTCTTAGGTCTGGGTGTAGCAAGGATGATGCTGGAAACTGCTCTCAAACTACTTCCATATATGGGTCTAAGCTTAGTTCATGGGTTGAGAATAGTAGTAATTTTAAACGTGAAAGCAGTGTTTCAACTGGATACTCCAAGCGACCAGATGAAGTTTGCAAATCAAATCGTAAAAGACTTAAACCAGGAGAGAACCCTAGGCCTAGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAATGTAGCATAGATGCACTTCTGGAAAAGACCATCAAGCATATGCTTTTCCTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGGGAATCTAAGATTGTCAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATATGAGGTTGGTGCACAATCAATGGTTTGTCCAATCATTGTTGAGGATCTCAATCCTCCTCGTCAGATGCTAGTAGAGATGCTTTGTGAGGAATGCGGTTTCTTTCTGGAAATAGCTGACTTAATCAGAGGATTAGGTTTAACCATCTTGAAGGGAGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACCAGGATGGAAATATTTATGTCACTGGTTCGTCTTTTGGATCAAACGATGAAGGGTGGTGCATCTTCGTCGAATGCAATTGATAACAACATGATGCTGTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGCAGGCCTAGTAGTTTGCAATGA
Predicted protein sequences of Glyma12g09990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g09990.2 sequence type=predicted peptide gene model=Glyma12g09990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGFSLKEALRTLCSRNRWSYAVFWKIGCNNSKLLIWEDYYYEPLPSPFPPRTVGRSNFPYQDGEGCWFSSESQLGIQEEDRVRVLINKMMVNNSVSIAGEGIVGRAAFTGNYQWILLNNFTRDAYPPEVYPELHYQFSAGMQTVAVIPVLPHGVVQLGSFSPIMEDIGFVNDVKNFILQLGCVPGALLSEDYSAKVSNEKFAGPVTVDPPVITSNCTPSVANGSNQLTNSPLASRPVAQPPHPLRGGINNYQGSLLTPQAYNPNQVFDGICQPKAHSMIKTNVCGQPKKTIVEAEAKVIPTNFDSCLQQHSVYNARSAFNELSSFNQSNLSDGSLKYMEQQTSGVGRQSQVIPNVNPSSALNMPRLKIDGGKILEQNQSSSDSSLLGGIPICSGSNLLRTNMINCSLSNPPKVSTNTSDFSGMYKVGFGLQSNNTTTNAVLCSVPNFTNQSVSNHMNLEGSGQKSLSIDLKQVWDAFASTDQRIDDDLLQAALKIPSLHLEEHVPMGDHISGFVQDCLSKDLTSQHMMKMNVKHAEADAQLPSGDDLFDVLGVDLKRRLLNGNRNELLATDSDAITEHLDKKATHMNLQGVGPNNSYSVNEAISESGIFSGTDTDHLLDAVVLKAQSAAKQNSDEMSCRTTLTRISTASIPSPVCKQVMPDHVAPRGLFDFPKTGVKTASAETSSLRSGCSKDDAGNCSQTTSIYGSKLSSWVENSSNFKRESSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLEKTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGAQSMVCPIIVEDLNPPRQMLVEMLCEECGFFLEIADLIRGLGLTILKGVMEARNDKIWARFAVEANRDVTRMEIFMSLVRLLDQTMKGGASSSNAIDNNMMLYHSFPQATQIPATGRPSSLQ*
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