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Report for Sequence Feature Glyma11g15504

Feature Type:gene_model
Chromosome:Gm11
Start:11139611
stop:11142833
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g15504
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59990AT Annotation by Michelle Graham. TAIR10: CCT motif family protein | chr5:24151206-24153084 REVERSE LENGTH=241 SoyBaseE_val: 1.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF06203PFAM CCT motif JGI ISS
UniRef100_G7JSL7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein CONSTANS-like protein n=1 Tax=Medicago truncatula RepID=G7JSL7_MEDTR SoyBaseE_val: 8.00E-84ISS
UniRef100_I1M624UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M624_SOYBN SoyBaseE_val: 7.00E-85ISS

Expression Patterns of Glyma11g15504
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g15504 not represented in the dataset
Glyma11g15504 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g15504
ParalogEvidenceComments
Glyma12g07926 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g15504 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.U033700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g15504
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g15504
>Glyma11g15504.2   sequence type=transcript   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTACACTCTCTCAAGAGAGGGGGAAAAAAAAAAGAAGAAAAGAAAAGAGTTTCTTTCGAATCCATTGGCTTTTTGGGTTTTGTTTTGTTCCGCATCTCCCCCACACTGAAAAATATTAAATACTAACCCCCTCCCTCTCTTCACATGCATAATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGGTTAACTAGCTAGCTAGTACCCTCATTACTGTAACGTCTAGGAGAGGAAAGAAACAATATGCTTGCAGAAAGACTTTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGATGAAACTGCTAAGAACCCTCCAGCTCAGTGGAGTCACATGGGAAATGGAGAGGAAGAGGATGAAGAGGAAGAGAATTGGGCTGATTTCTTTGATTCCTTAGTTCCTGCAAATATTGCTCAGGAGCCTCAAGGCAGTAGTTCCTCCTTTGGTGTGTTCTATTAAAATAATTGCATCCTTAAATCAGCATGGCTAGATAATTAAGTTGTTTGTTTTTCCATGTTTTTTTTTTTTAAGTTTTGAAGTTGGTAATGTAAATATATATCTATATATATATATAGGTACTTACTTGAATCATGGATGTGACCATGTGCAGTTTTAGACTTCAATCTGGGGTGAAGTTTTTAGTGCCCTTTTATGGTTTTATAGACTAGGCCTCAGTAGCAGCAGCAGCATTGTATTGTTTGGACAAAAAAGCTTTTGCAAGTTGTACTTGGGGTTTATTTCCTATATGATGTATTTATATATTTTATACCATA
Coding sequences of Glyma11g15504
>Glyma11g15504.1   sequence type=CDS   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGTATGCTTGCAGAAAGACTTTGGCAGATAGCAGGCCACGTATCAGAGGGCGATTTGCAAGGAATGATGAAACTGCTAAGAACCCTCCAGCTCAGTGGAGTCACATGGGAAATGGAGAGGAAGAGGATGAAGAGGAAGAGAATTGGGCTGATTTCTTTGATTCCTTAGTTCCTGCAAATATTGCTCAGGAGCCTCAAGGCAGTAGTTCCTCCTTTGGTGTGTTCTATTAA

>Glyma11g15504.2   sequence type=CDS   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATTCATTCTTTTTATTCCTCAACCTCTCTACTAAGCTTACTTCTTCCCGATCCACCTTCCCACGCGCCATGTACACACACCGCAACGCCTCGCTCTCACGCGCCGCCGCCGACTCCCTCGGCCATTTCCTCTCTCCACCGGACGCATCCACGGCGTCGCCAATGCAGTACTCCGCCGCCGCTCACCACCAACTCGGGCTGGGCGAGTTTGACAACTCGGTTCACGAACTCAATTACTCGGAGATGAGTTCGAGTAACACGTACAACAGCTGCAGCAGCGGGTGCACGAGCTACATGGGGTCGCCGAGTTCGCTGGCGAGTAATTACGAGAGTCGGCGAGTAGTGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATGGTAGGGCCCACCACCAACCCTTTTCTGAGTTCTCTCCTCTTTTCGTTGAGTTCATTGACTCGGAAAACGGTCCCGTACGGAGAGCTTGCAGTACCGGTGACCTTCAGAGATTCAATGGAATGCAACATTTTCAGCATTCTGATAGCTCATTGTCAAGTGAAAGTAGTTTGATCATTGAAGAAATGAGCAGAACCAGTCCTTATAGCCCAGAGGAGAAGAAGGTGAGGATTGAGAGATATAGGAACAAGAGAAACCAGAGGAACTTCGGCAAGAAAATTAAGGTTAACTAG
Predicted protein sequences of Glyma11g15504
>Glyma11g15504.1   sequence type=predicted peptide   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSFFLFLNLSTKLTSSRSTFPRAMYTHRNASLSRAAADSLGHFLSPPDASTASPMQYSAAAHHQLGLGEFDNSVHELNYSEMSSSNTYNSCSSGCTSYMGSPSSLASNYESRRVVQRSVSSHSLQKNGRAHHQPFSEFSPLFVEFIDSENGPVRRACSTGDLQRFNGMQHFQHSDSSLSSESSLIIEEMSRTSPYSPEEKKVRIERYRNKRNQRNFGKKIKYACRKTLADSRPRIRGRFARNDETAKNPPAQWSHMGNGEEEDEEEENWADFFDSLVPANIAQEPQGSSSSFGVFY*

>Glyma11g15504.2   sequence type=predicted peptide   gene model=Glyma11g15504   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHSFFLFLNLSTKLTSSRSTFPRAMYTHRNASLSRAAADSLGHFLSPPDASTASPMQYSAAAHHQLGLGEFDNSVHELNYSEMSSSNTYNSCSSGCTSYMGSPSSLASNYESRRVVQRSVSSHSLQKNGRAHHQPFSEFSPLFVEFIDSENGPVRRACSTGDLQRFNGMQHFQHSDSSLSSESSLIIEEMSRTSPYSPEEKKVRIERYRNKRNQRNFGKKIKVN*






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