Glyma11g11410 - SoyBase

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Report for Sequence Feature Glyma11g11410

Feature Type:	gene_model
Chromosome:	Gm11
Start:	8131769
stop:	8134732
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g11410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34980	AT	Annotation by Michelle Graham. TAIR10: subtilisin-like serine protease 2 \| chr4:16656929-16659223 REVERSE LENGTH=764	SoyBase	E_val: 0	ISS
GO:0000096	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0008652	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0009069	GO-bp	Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0043086	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048196	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant extracellular matrix	SoyBase	N/A	ISS
GO:0004252	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
PTHR10795	Panther	SUBTILISIN/KEXIN-RELATED SERINE PROTEASE	JGI		ISS
PTHR10795:SF17	Panther	gb def: possible protease [sinorhizobium meliloti]	JGI		ISS
PF00082	PFAM	Subtilase family	JGI		ISS
PF02225	PFAM	PA domain	JGI		ISS
PF05922	PFAM	Peptidase inhibitor I9	JGI		ISS
UniRef100_B9T6I8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cucumisin, putative n=1 Tax=Ricinus communis RepID=B9T6I8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LJ14	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LJ14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g11410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g11410

Paralog	Evidence	Comments
Glyma12g03570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g11410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g106800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g11410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g11410

Limit To All Plant Sequences

>Glyma11g11410.1   sequence type=CDS   gene model=Glyma11g11410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAACAAGTATTGAATTCCTTTCCTCTCATCGTTTTCTTCTTCATTTTGTTTTCCACTGTTTCCGCTGATGAAGTTTCCAAGACCTTCATCTTCCGCGTGGATTCCCAATCCAAGCCCACCGTGTTCCCCACTCACTACCATTGGTACACCTCCGAGTTCGCCCAAGAAACCAGCATCCTCCACTTATACGACACCGTTTTCTGCGGCTTCTCCGCAGTGCTCACAAGCCACCAAGTCGCGTCCATAAGCCAACACCCTTCCGTCCTCGCCGTCTTCGAAGACCGCCGCCGCCAGCTCCACACCACGCGCTCCCCGCAGTTCCTCGGCCTCCGCAACCAGCGCGGCCTCTGGTCCGAATCCGACTACGGCTCCGACGTCATCGTCGGAGTCTTCGACACCGGCGTCTGGCCGGAACGCCGCAGCTTCTCCGATTTGAACCTCGGCCCCATTCCCCGCCGCTGGAAAGGCGCGTGCGAAACCGGCGCCAGTTTCTCTCCCAAAAACTGCAACCGCAAGCTCATCGGCGCCAGATTCTTCTCCAAAGGCCACGAAGCAGGTGCGGGTTCCGGCCCTCTCAATCCGATTAACGAGACCGTCGAATTCCGATCCCCTCGCGACGCCGATGGCCACGGCACCCACACCGCCTCCACCGCCGCCGGACGCTACGCCTTCCAAGCCAGCATGTCCGGCTACGCAGCTGGAATCGCAAAAGGCGTTGCTCCCAAAGCGAGATTGGCGGTTTACAAAGTTTGCTGGAAAAATTCCGGTTGCTTCGACTCCGACATCCTCGCCGCCTTCGACGCCGCCGTGAACGACGGCGTGGATGTCATTTCGATTTCCATCGGTGGCGGTGACGGTATTGCCTCCCCATATTATCTCGACCCCATCGCAATTGGATCCTACGGTGCCGTTTCAAGAGGAGTGTTCGTGTCTTCTTCCGCCGGAAACGATGGTCCCAGCGGAATGTCAGTGACGAACCTTGCTCCATGGTTAACAACAGTGGGCGCAGGCACCATTGATCGTGAATTCCCCTCACAGGTGATTCTGGGCGACGGTCGGAGACTCTCCGGCGTGTCGCTCTACGCCGGAGCAGCTTTGAAGGGGAAAATGTATCAACTTGTATACCCTGGGAAATCAGGAATTCTTGGAGACTCACTCTGCATGGAGAATTCGCTAGATCCGAGCATGGTGAAGGGTAAGATAGTGATCTGTGATAGAGGAAGTAGTCCGAGGGTTGCAAAGGGGTTAGTGGTGAAGAAAGCCGGCGGCGTGGGGATGATTCTCGCCAACGGAATCTCCAACGGTGAAGGACTCGTCGGAGACGCTCATCTTCTCCCAGCATGCGCTGTTGGTGCCAACGAAGGAGACCTAATCAAGAAGTACATCTCCTCTTCAAAAAACCCCACAGCCACTCTTGATTTCAAAGGCACTATCTTAGGAATCAAACCGGCGCCGGTTATAGCTTCTTTCTCAGCGAGAGGACCCAACGGTTTAAACCCTGAGATACTTAAACCGGATTTGATTGCTCCCGGTGTGAACATCCTCGCGGCTTGGACCGAAGCTGTCGGCCCGACCGGTTTGGACTCTGATACGAGGAGAACCGAGTTCAACATCCTGTCTGGTACCTCCATGGCTTGCCCTCACGTGAGCGGCGCCGCGGCTTTGCTCAAATCGGCTCACCCTGATTGGAGCCCCGCCGCCATAAGGTCCGCCATGATGACCACCGCCACCGTCCTCGACAACCGTAACAAAACCATGACCGACGAAGCCACCGGGAACAGTTCCACGCCTTACGATTTCGGCGCTGGCCATCTTAACCTAGGAAGAGCCATGGATCCTGGTTTGGTGTATGATATCACAAACAATGATTATGTTAATTTCCTTTGCGGTATTGGCTACGGGCCTAAGGTGATTCAGGTGATCACTCGCGCGCCGGCGAGTTGTCCGGTGAGAAGGCCGGCGCCGGAGAATCTGAATTACCCTTCCTTTGTTGCTTTGTTTCCTGTTTCGTCGAAGAGGGTGGCTTCCAAGACGTTCATACGGACCGTGAGCAATGTGGGGCCCGCGAACTCTGTTTACCGCGTAAGCGTGGAGGCGCCCGCAAGTGGGGTGACCGTGAAGGTGAAGCCGTCGCGGCTCGTGTTCTCGGAGGCGGTGAAGAAACGGAGCTATGCGGTGACGGTGGCGGGGGATACCCGGAACCTGAAGATGGGTCAGTCCGGGGCGGTGTTCGGGTCGCTGACGTGGACGGATGGGAAGCACGTGGTTCGGAGCCCCATTGTCGTGAGTCAAATAGAACCGTTATAG

Predicted protein sequences of Glyma11g11410

Limit To All Plant Sequences

>Glyma11g11410.1   sequence type=predicted peptide   gene model=Glyma11g11410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKQVLNSFPLIVFFFILFSTVSADEVSKTFIFRVDSQSKPTVFPTHYHWYTSEFAQETSILHLYDTVFCGFSAVLTSHQVASISQHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSESDYGSDVIVGVFDTGVWPERRSFSDLNLGPIPRRWKGACETGASFSPKNCNRKLIGARFFSKGHEAGAGSGPLNPINETVEFRSPRDADGHGTHTASTAAGRYAFQASMSGYAAGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDAAVNDGVDVISISIGGGDGIASPYYLDPIAIGSYGAVSRGVFVSSSAGNDGPSGMSVTNLAPWLTTVGAGTIDREFPSQVILGDGRRLSGVSLYAGAALKGKMYQLVYPGKSGILGDSLCMENSLDPSMVKGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACAVGANEGDLIKKYISSSKNPTATLDFKGTILGIKPAPVIASFSARGPNGLNPEILKPDLIAPGVNILAAWTEAVGPTGLDSDTRRTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTATVLDNRNKTMTDEATGNSSTPYDFGAGHLNLGRAMDPGLVYDITNNDYVNFLCGIGYGPKVIQVITRAPASCPVRRPAPENLNYPSFVALFPVSSKRVASKTFIRTVSNVGPANSVYRVSVEAPASGVTVKVKPSRLVFSEAVKKRSYAVTVAGDTRNLKMGQSGAVFGSLTWTDGKHVVRSPIVVSQIEPL*

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