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Report for Sequence Feature Glyma11g09280

Feature Type:gene_model
Chromosome:Gm11
Start:6578309
stop:6579727
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g09280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76410AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:28668915-28669472 FORWARD LENGTH=185 SoyBaseE_val: 6.00E-62ISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG1493 KOG Anaphase-promoting complex (APC), subunit 11 JGI ISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF16Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7K2K6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein n=1 Tax=Medicago truncatula RepID=G7K2K6_MEDTR SoyBaseE_val: 1.00E-113ISS
UniRef100_I1LIC9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LIC9_SOYBN SoyBaseE_val: 1.00E-163ISS

Expression Patterns of Glyma11g09280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g09280
ParalogEvidenceComments
Glyma01g36160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g09280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g087600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g09280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g09280
>Glyma11g09280.1   sequence type=CDS   gene model=Glyma11g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCGCGCGTTCAGAATTCTAAACTCCGCGGACAACGCCACCGCGGTAGCCGCGGCGGCGCCTCCGCCGGAGGCGGTAGCGCTGGAGTCCGACTTCGTGGTGATTCTCGCGGCGCTCCTCTGCGCGCTCATCTGCGTGGTGGGGCTGGTGGCGGTGGCGCGGTGCGCGTGGCTCCGGCGAGGCTCGGGTGCCGGAAACTCTCCTCGGCAAGCCTTGGCGAACAAGGGCCTGAAGAAGAAGGTGCTGCAGTCGCTTCCGAAGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGTTAGCGACGTCGGAATGCGCGATCTGCCTCGCCGAGTTCGCCGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGCCACGGCTTCCACGTGCCCTGCATCGACACGTGGCTTGGGTCCCACTCCTCTTGCCCTTCTTGTCGACAGGTTTTGGCGGTGGCCAGGTGTCAGAAGTGTGGGCGATTTCCGGCCACCGGTGCCGGAGCTTCCAGAACGCCGGCGACCGAACCCGAATTGAAGTCCAGAGAAGACAACAATGCCGCGAGTTACAGCAATAATAATATTAATAACAACAGCGACAGGGGTGGCAGTAACAGTAATAGTAATTGTAACATGGAACATCATCATCACAGCCACCATGTGAATAGTGGGTTCTTGCCCTGA
Predicted protein sequences of Glyma11g09280
>Glyma11g09280.1   sequence type=predicted peptide   gene model=Glyma11g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRAFRILNSADNATAVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSGAGNSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFAAGDEIRVLPQCGHGFHVPCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGASRTPATEPELKSREDNNAASYSNNNINNNSDRGGSNSNSNCNMEHHHHSHHVNSGFLP*






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