Glyma11g05760 - SoyBase

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Report for Sequence Feature Glyma11g05760

Feature Type:	gene_model
Chromosome:	Gm11
Start:	4067398
stop:	4077158
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g05760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23380	AT	Annotation by Michelle Graham. TAIR10: SET domain-containing protein \| chr2:9955570-9960117 FORWARD LENGTH=902	SoyBase	E_val: 0	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006349	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting	SoyBase	N/A	ISS
GO:0009294	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0045857	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of molecular function, epigenetic	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0003727	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR22884	Panther	SET DOMAIN PROTEINS	JGI		ISS
PTHR22884:SF18	Panther	ENHANCER OF ZESTE, EZH	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
UniRef100_G7K5B7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase CLF n=1 Tax=Medicago truncatula RepID=G7K5B7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CFDE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CFDE related cluster n=1 Tax=unknown RepID=UPI000233CFDE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g05760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g05760

Paralog	Evidence	Comments
Glyma01g39490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g05760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g054100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g05760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g05760

Limit To All Plant Sequences

>Glyma11g05760.1   sequence type=CDS   gene model=Glyma11g05760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAAGCCTCCGCCTTCGCCCTCGCCCTCTTCTTCCAGATCAGAGCCTCTCGTTGATCTCTCCTCAAATAAAGTGGAGGATTCAAGTCCCGCTGGTAAAGATGTGTTACTGGTTATTGATTCTTTGAAGAAACAAGTTGCTGCAGAACGGGTTGTTTCTGTAAAGAAAAGAATAGAGGAAAACAGACAGAAGCTGGTTGGTGTCACTAACCATGTCTGCACAATGTCAATGGAGAGAAGGAACTTCAGCATTACTGATACGAATAGAAGTCTGGACCTACTTACAAAGAGGCAAAAAGATGCAATTGATATGCACAACGGTGTTCATGCGAGTAATGGTGATGTGGAGAGCAATGGCTATCATGACGATAGCCATGGTTCCACAGCAGTTCTTCTAGGGTCTAATGTTGCTGTAAAGAATGCTGTTCGTCCTATCAAGTTACCTGAAGTAAAAAAATTGCCTCCTTACACTACATGGATTTTTTTGGACAGAAATCAAAGAATGACCGAGGATCAGTCAGTTGTAGGCCGGAGACGAATTTATTATGATCAGAATGGTGGAGAAGCACTTATTTGCAGTGACAGTGAAGAGGAAACTATGGACGATGAAGAGGAGAAAAGACAATTTATAGAATCAGAAGATTATATACTTCGCATGACTGTCAAAGAGTTTGGTTTAACTGACATTGTTCTGGAGTCGTTGGCTCAGTGTTTTTCTAGAAACACTAGTGAAATTAAGGCAAAGTATGAAACTCTCAGTATTCAAGACAATGCTGGTGGCTGTTCCAAGGCTGGGGATTCTGAAGAGAATTCTCAAAGTGGCAATTCTTTTCTGGAAAAGGATCTTGAAGCAGCTCTTGACTCTTTTGACAACCTCTTTTGTCGACGATGCCTTGTTTTTGATTGTAGATTACATGGATGTTCACAAGATCTTGTCTTCCCTGCTGAGAAGCAACCTACATGGAACCCTCCTGATACTGAAAATGCATCCTGTGGGCCAAATTGTTTCCGATCGGTACTTAAGTCGGAAAGATTTGCCAAAACATCCTCTGCCCAGGCTGATGAACAGAAGTCCTCTGGTGGTGCTTTATCTAGGAAAAAATCTTCTGCTAAGAGGCGGATAAAATGTAGCCAAAGTGAAAGTGCTTCATCTAATGCAAAAAACATATCAGAGAGTAGTGACTCAGAGAATGGTCCTGGACAAGATGCTGTCTCAGCCTCACACTCAGCACCTCCTAAAACTAAACCTGTGGGGAAAGGTGGAATTGGTAAAAGGAACAGTAAGCGAGTGGCAGAACGAGTCCTAGTATGCATGCAGAAGCGGCAGAAGAAAACAATGGTTTCTGATTCTGATTCCATTAGTGAAGCTCTTGACCGTTCATCGAATGATATGGTCACTGACCCACATGCCATGAGCAGTGAAGACAACACGAGGAAAGAAGAGTTTGTAGATGACAATGTTTGTAAACCAGAAATCACTGATAATAAATCTTGGAAAGCTCTTGAAAAGGGACTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGAAATCTCTTAAATGGCCTAAAGACGTGTTGGGATGTTTTCCAATACATAAATTGTGAAGATGGAAAGATGTCTGGTCCTCCTGGGGATGTTGCAAATTCCCTCATGGACGGCTATTCCAAGGGTAATAATGAAGTGAGACGAAGGTCTAGATTCTTACGTAGAAGAGGAAGAGTCCGTCGATTGAAGTACACCTGGAAATCTGCTGCTTATCATTCAATTAGGAAAAGGATTACAGAGAGAAAGGATCAACCCTGCCGACAGTATAATCCATGTGGTTGCCAAACGGCTTGTGGAAAGCAGTGTCCTTGTCTTCAAAATGGAACCTGCTGTGAGAAGTACTGTGGATGCCCCAAGAGCTGCAAGAATCGATTTCGTGGCTGTCATTGTGCTAAGAGTCAATGCAGAAGCCGTCAATGTCCATGTTTTGCTGCAGATAGGGAATGTGATCCAGATGTTTGTAGGAATTGTTGGGTCAGTTGTGGCGATGGTACACTTGGGATTCCTAGCCAAAGAGGGGACAATTATGAATGTAGAAACATGAAGCTTCTTCTCAAACAACAGCAAAGGGTTCTTCTTGGAAGGTCTGATGTATCCGGCTGGGGAGCCTTCTTAAAGAATAGTGTTGGTAAGCATGAATACCTTGGAGAGTATACTGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGATCAGTTTGTTCTTGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCATTCTCCTGACCCAAATTGTTATGCAAAGGTTATTATGGTTGCTGGAGATCATAGGGTAGGCATTTTTGCCAAGGAACGGATTTGTGCCGGGGAGGAGCTGTTCTATGATTATCGTTATGAGCCAGATAGGGCTCCTGCGTGGGCTCGGAAGCCAGAGGCATCTGGATCAAAAAAAGAGGATGGGGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA

Predicted protein sequences of Glyma11g05760

Limit To All Plant Sequences

>Glyma11g05760.1   sequence type=predicted peptide   gene model=Glyma11g05760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKPPPSPSPSSSRSEPLVDLSSNKVEDSSPAGKDVLLVIDSLKKQVAAERVVSVKKRIEENRQKLVGVTNHVCTMSMERRNFSITDTNRSLDLLTKRQKDAIDMHNGVHASNGDVESNGYHDDSHGSTAVLLGSNVAVKNAVRPIKLPEVKKLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEETMDDEEEKRQFIESEDYILRMTVKEFGLTDIVLESLAQCFSRNTSEIKAKYETLSIQDNAGGCSKAGDSEENSQSGNSFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPTWNPPDTENASCGPNCFRSVLKSERFAKTSSAQADEQKSSGGALSRKKSSAKRRIKCSQSESASSNAKNISESSDSENGPGQDAVSASHSAPPKTKPVGKGGIGKRNSKRVAERVLVCMQKRQKKTMVSDSDSISEALDRSSNDMVTDPHAMSSEDNTRKEEFVDDNVCKPEITDNKSWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEDGKMSGPPGDVANSLMDGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQTACGKQCPCLQNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPAWARKPEASGSKKEDGAPSSGRAKKLA*

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