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Report for Sequence Feature Glyma11g05720

Feature Type:gene_model
Chromosome:Gm11
Start:4038786
stop:4042084
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g05720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36920AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432 SoyBaseE_val: 3.00E-120ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010093GO-bp Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity SoyBaseN/AISS
GO:0019953GO-bp Annotation by Michelle Graham. GO Biological Process: sexual reproduction SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR11795Panther PROTEIN KINASE JGI ISS
PTHR11795:SF332Panther JGI ISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_G7K5B3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor APETALA2 n=1 Tax=Medicago truncatula RepID=G7K5B3_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LHC4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LHC4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g05720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g05720
ParalogEvidenceComments
Glyma01g39520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g05720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g053800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g05720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g05720
>Glyma11g05720.1   sequence type=CDS   gene model=Glyma11g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAATCTGAATGACTCTCCCGATCAGAGAAAGGACTATGAATCTGAAGGCTGTTCTTCTTCTCTGAATGATGATAAAGGCAAGAGAGTGGGATCTGCTTCCAATTCAAGCTCCTCTGCGGTGGTAGTTGAAGATGGATCGGAAGAAGAAGACAGTGAAAGAGGTGGAAGCAGAACATTGGACAAGAAAACCAACAAAATATTCGGCTTTGCGGTAGCCCATGATGACAGTGACCACCCACCCGTGACCCATCAGTTTTTTCCTGTTGAGGACTCCGAACTGCCTGTCTCCGCCGCCGCCGCAGGCAGTGGAGGCGGTGGCGGCGGAAGCTCCTTCCCACGTGCTCACTGGGTAGGTGTCAAATTTTGTCAATCGGAAACACCCGGCGCCGGAAAAGCAGTGACAGTGTCGGAGCCGATGAAGAAAAGTCGCCGAGGACCACGCTCGCGTAGCTCACAGTATCGAGGAGTTACTTTCTACAGAAGACTGGTAGATGGGAATCTCATATATGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGATGACCAATTTAACCAAGGAAGAGTTTGTCCACGTACTTCGCCGACAAAGCACTGGATTTCCCAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTATGTTTATCTGGGTCTGTTTGACACCGAAATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGTAATGGCAAGGAGGCTGTCACCAATTTTGATCCTAGCATCTATGATAGTGAGCTTAATTCTGAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGCAATTCCAGCTCTAAACATAACAATAGTCAAACATCGGGGAATCACTTCGCAAATTCTGCAACCGATCAGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAACATAGAAGCCTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTCAATCCCCTACCAATAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCAGCAGAGCCACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCATGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAGCAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCCTCATGA
Predicted protein sequences of Glyma11g05720
>Glyma11g05720.1   sequence type=predicted peptide   gene model=Glyma11g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWNLNDSPDQRKDYESEGCSSSLNDDKGKRVGSASNSSSSAVVVEDGSEEEDSERGGSRTLDKKTNKIFGFAVAHDDSDHPPVTHQFFPVEDSELPVSAAAAGSGGGGGGSSFPRAHWVGVKFCQSETPGAGKAVTVSEPMKKSRRGPRSRSSQYRGVTFYRRLVDGNLIYGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSESSGGVAADHNLDLSLGNSSSKHNNSQTSGNHFANSATDQHMPPESNWRNGGSKPKLVNILPKPCGRSNIEAYGHGESETLRLLSQTHLQSPTNKEMHRYGPYRSPAEPQKPHNFAHHLHQPSFHVPSSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPQQIRPSQGWLQKNGFHSLMRPS*






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