Glyma10g28250 - SoyBase

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Report for Sequence Feature Glyma10g28250

Feature Type:	gene_model
Chromosome:	Gm10
Start:	37123335
stop:	37125928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g28250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09540	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 61 \| chr1:3086333-3087689 FORWARD LENGTH=366	SoyBase	E_val: 6.00E-113	ISS
GO:0001944	GO-bp	Annotation by Michelle Graham. GO Biological Process: vasculature development	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7IAD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7IAD1_MEDTR	SoyBase	E_val: 2.00E-142	ISS
UniRef100_I1LAY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LAY2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g28250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g28250

Paralog	Evidence	Comments
Glyma20g22230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g28250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g142200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g28250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g28250

Limit To All Plant Sequences

>Glyma10g28250.1   sequence type=CDS   gene model=Glyma10g28250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGACACTCTTGTTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCAGAGGAAGACGAGAAGCTTCTCAATCACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTTCCCAAACTAGCTGGTTTGCAGAGATGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTATCTAAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAACATGATTGTTGAACTTCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACAGACAATGAGATTAAGAACCTATGGAACTCGTGCCTGAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAACCACACACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACATGAATATGATGCCACCCTCAACCGACAAAAGCACTCAGAAAGCCTCTGTGGGATCCAATGAAGTAGTGAGTAATTTGGTTGATCATCATCAGCCACCAAAAACCATGCCTAATTCTTCATCAGAGAGATACCCTCTTGAAGTTTCCACTACTAGTTCCACCCAGGAACTGTTCCTAGATAGGTTTGGCACCACCACCACCACCTGCCACGAAAACAACAACAACACTTCTGATTTGGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACAACAAGCATGGCCCTCTCTTCAAACCCCAACACCTCTCTTTGTTTCATTCTACCCTCCACTTCTTCAGACATTAATAATAACAACTCCATCATAACCTCCTCCTCCATGCTCCCTTCAATTTTCCCAACACAACATGTGAAGCTCCAATCTAATAACAACAACCCTTCTTCCATTTCATCTGATGGGGTTCAAAACTGGGAAACAAGTAACAACACAAACAAAAACAATGGGAATATGCAGTTACAAAGTAGCACAAACTACCTTGACAGCACGTGGGGGGTGGCAGAGTCTATGAAGATTGTTAACATTAACAAAGAGGCTCAAGTAGTGCCTCTACAAGCAGAACAAGAAGATCTAAAATGGTCTGAGTATCTTAACACCCCGTTTATTCTGGGAAACAACACAACGCAGAATCATCAAATTCAAACCTCTCAATCTATCTACACTGAGGTTATTAAACCAGAAACAGGTTTCATAATAGACGAGTCATGTACTAGTAATTGGCACCATCATCAGCCACCACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCCTGTAA

Predicted protein sequences of Glyma10g28250

Limit To All Plant Sequences

>Glyma10g28250.1   sequence type=predicted peptide   gene model=Glyma10g28250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRHSCCYKQKLRKGLWSPEEDEKLLNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPTTHKPLSEVENDKDMNMMPPSTDKSTQKASVGSNEVVSNLVDHHQPPKTMPNSSSERYPLEVSTTSSTQELFLDRFGTTTTTCHENNNNTSDLVGSYFSFQHLNYGTTTSMALSSNPNTSLCFILPSTSSDINNNNSIITSSSMLPSIFPTQHVKLQSNNNNPSSISSDGVQNWETSNNTNKNNGNMQLQSSTNYLDSTWGVAESMKIVNINKEAQVVPLQAEQEDLKWSEYLNTPFILGNNTTQNHQIQTSQSIYTEVIKPETGFIIDESCTSNWHHHQPPPAFQLSDIYSKDLQRFSVTFGQTL*

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