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Report for Sequence Feature Glyma09g01556

Feature Type:gene_model
Chromosome:Gm09
Start:994515
stop:1000368
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17220AT Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 70-5 | chr4:9657008-9659405 REVERSE LENGTH=513 SoyBaseE_val: 8.00E-177ISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005874GO-cc Annotation by Michelle Graham. GO Cellular Compartment: microtubule SoyBaseN/AISS
GO:0008017GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule binding SoyBaseN/AISS
PF07058PFAM Myosin II heavy chain-like JGI ISS
UniRef100_B9SA68UniRef Annotation by Michelle Graham. Most informative UniRef hit: Myosin heavy chain, clone, putative n=1 Tax=Ricinus communis RepID=B9SA68_RICCO SoyBaseE_val: 0ISS
UniRef100_I1MFR1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MFR1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g01556 not represented in the dataset

Glyma09g01556 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g12490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g013100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g01556.2   sequence type=transcript   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACTTCTAAGGATAAGAAATAGAGAGAAAGTAACCGTTGCTGTCAAAGCTAGAATTAAGGAGGAGCTAATGAGTGACCAAGCCTCATTTGTTGTTGGACAAAGCCTATTTGTGTGAGCATTTGGCAGCACCAGAAAGAGGAAAATGGTGGCTAGTGAAGAGATATATGGTGGGGAAGAACTTTCTCTTGTCCAACCAGACCCTATGGGGTTGCAGATTGATCGTTTGCACAACCAACTCACAGAAAAGGTCAAGGAACTAGCAAATTGCCAGAGTGAAATCAAGGCCTTAAGGGCAACTGAAGCTAAAAAGGACAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAGCTGGACGATAAACTAAGACTTACTGAGGATCATCTCAAACATAAGAAGCTAGAAATCAAGAAACTGACAGAGGAAAAGAAAGATGCATTGGCCGCACAATATGCAGCAGAAGCAACTCTTAGAAGGTTACATGCAGATCAAAAGGAAGATGATTTTGTTCCTCTTGAGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGATTGCATCACTTCAAGAAGATAAGAAAGCCTTGGAACGACTCACAAAGTCAAAAGAGGCTGCACTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAGAGAGAGTTTTAATAGTTGAGGAAGTTCAAAATGAGAATTTTGACTTAAAGAGACAGATTGAAATCTGCCAGGAGGAGATCAAAATCTTAGAGAAAACACATCGTCAAAAGATTTTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTGGAGGAGATCATCCTATCCAGTGGAGTCAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGAGGAGAAAAGGACACTGGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAGCCAACAGAGTTGCAACTGTTGTGGCTAATGAGTGGAAGGATGAGAATGACAAGGTCATGCCTGTCAAGCAATGGCTGGAAGAGAGAAGGATAATGCAGGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAGGATAAACTGAAGCTGAGGTTAAAAACACTAGAAGAAGGCTTAAAGCATTTCTCAAATCACCCAGTCAGTTCAAATTCCGTGTCTGCAAAATCAGAAAAGTCTAAGATCTTAAGCTTCCTAACGACCAATAGCGGACTGAGAAACAGATCCACATCACAACCAAGGGGATCTGCTATTGGAAGCTCTTTGTTCCAAAAGTCAAATGCAAAAAGCAACACAGACAGTGTTACTGGGAGCCTAATACCAGGCAGCATTATGAAAAAGAAATATGGTTCGGCAGAAAATGTGTTGAAGAAAGGTATATGGGCATCAAGACACAAAGTTGCTGATAGTGATGAAAAAGAAAATGAGATGCAGGTGAACGCAGGCATGAATTCAAATAAATGCAATGATGAAAAAGAAGCAGCAGAAATTAAAACCAGTATTGATGATAATGACGACTCTAAAAGCAATAGCTGTAATGATTTAGGCAGCAATGATGTGGTCTCAGGTTTTTTATATGATAGGCTTCAAAAAGAGTTCATCAATTTGAGAAAGTCTTGTGAAATTAAAGAGAGTAATTTGCACACTAAAGATGAAGAAATAAAGATTCTCACTAAGAAAGTTGATGCATTGACAAAGGCTATGGAAATAGAGTGGAAAAAAATGAAAAGAGAAGCAGCTGCCAGAGAGAAGGAGGCTGCATCAACAAAATCAGATGATAACAGGAAACTCAGACGCTCAAACTCCTCTAGAAGGATGATATGATGAAGAACACATTGAAGAGTCTTTATTTAGAGAAATCTGAAGGCAATTTAATAATCAATGGCATCTTGTGATTTTTCTTTGTAAATAAAAAGCAAAAATTTAGTGAGGTAGTATGTTGAAATAAAGTTTCACTGGGCTAAGGGAGTCTGGGATCTGACTCTGTGCATACTACATACACTAAATTTATTTAAATGGCATCCTCTGTGCTCTGTGATTGTGTGTATTACATACATACTATCCCTGTTTGTCAAATGTATCTGCAGAGAGATGAAATATATATGATGAACATTTGGAAAATATTTGAATTACATGTCTGCATTATGTGTATCAAAAATCTTATTTACCAAAGATGATTATAAAGAAAGACTATTCCTGAATA

>Glyma09g01556.1   sequence type=CDS   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTAGTGAAGAGATATATGGTGGGGAAGAACTTTCTCTTGTCCAACCAGACCCTATGGGGTTGCAGATTGATCGTTTGCACAACCAACTCACAGAAAAGGTCAAGGAACTAGCAAATTGCCAGAGTGAAATCAAGGCCTTAAGGGCAACTGAAGCTAAAAAGGACAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAGCTGGACGATAAACTAAGACTTACTGAGGATCATCTCAAACATAAGAAGCTAGAAATCAAGAAACTGACAGAGGAAAAGAAAGATGCATTGGCCGCACAATATGCAGCAGAAGCAACTCTTAGAAGGTTACATGCAGATCAAAAGGAAGATGATTTTGTTCCTCTTGAGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGATTGCATCACTTCAAGAAGATAAGAAAGCCTTGGAACGACTCACAAAGTCAAAAGAGGCTGCACTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAGAGAGAGTTTTAATAGTTGAGGAAGTTCAAAATGAGAATTTTGACTTAAAGAGACAGATTGAAATCTGCCAGGAGGAGATCAAAATCTTAGAGAAAACACATCGTCAAAAGATTTTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTGGAGGAGATCATCCTATCCAGTGGAGTCAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGAGGAGAAAAGGACACTGGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAGCCAACAGAGTTGCAACTGTTGTGGCTAATGAGTGGAAGGATGAGAATGACAAGGTCATGCCTGTCAAGCAATGGCTGGAAGAGAGAAGGATAATGCAGGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAGGATAAACTGAAGCTGAGGTTAAAAACACTAGAAGAAGGCTTAAAGCATTTCTCAAATCACCCAGTCAGTTCAAATTCCGTGTCTGCAAAATCAGAAAAGTCTAAGATCTTAAGCTTCCTAACGACCAATAGCGGACTGAGAAACAGATCCACATCACAACCAAGGGGATCTGCTATTGGAAGCTCTTTGTTCCAAAAGTCAAATGCAAAAAGCAACACAGACAGTGTTACTGGGAGCCTAATACCAGGCAGCATTATGAAAAAGAAATATGGTTCGGCAGAAAATGTGTTGAAGAAAGGTATATGGGCATCAAGACACAAAGTTGCTGATAGTGATGAAAAAGAAAATGAGATGCAGGTGAACGCAGGCATGAATTCAAATAAATGCAATGATGAAAAAGAAGCAGCAGAAATTAAAACCAGTATTGATGATAATGACGACTCTAAAAGCAATAGCTGTAATGATTTAGGCAGCAATGATGTGGTCTCAGGTTTTTTATATGATAGGCTTCAAAAAGAGTTCATCAATTTGAGAAAGTCTTGTGAAATTAAAGAGAGTAATTTGCACACTAAAGATGAAGAAATAAAGATTCTCACTAAGAAAGTTGATGCATTGACAAAGGCTATGGAAATAGAGTGGAAAAAAATGAAAAGAGAAGCAGCTGCCAGAGAGAAGGAGGCTGCATCAACAAAATCAGATGATAACAGGAAACTCAGACGCTCAAACTCCTCTAGAAGGATGATATGA

>Glyma09g01556.2   sequence type=CDS   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTAGTGAAGAGATATATGGTGGGGAAGAACTTTCTCTTGTCCAACCAGACCCTATGGGGTTGCAGATTGATCGTTTGCACAACCAACTCACAGAAAAGGTCAAGGAACTAGCAAATTGCCAGAGTGAAATCAAGGCCTTAAGGGCAACTGAAGCTAAAAAGGACAAGGCCATAGAAGAGCTGAGAAATGAAGTCGGTAAGCTGGACGATAAACTAAGACTTACTGAGGATCATCTCAAACATAAGAAGCTAGAAATCAAGAAACTGACAGAGGAAAAGAAAGATGCATTGGCCGCACAATATGCAGCAGAAGCAACTCTTAGAAGGTTACATGCAGATCAAAAGGAAGATGATTTTGTTCCTCTTGAGAGTGTCATTACTCCTCTTGAAGCTGAGATTAAGATGTATAGGAATGAGATTGCATCACTTCAAGAAGATAAGAAAGCCTTGGAACGACTCACAAAGTCAAAAGAGGCTGCACTGCTTGAAGCAGAGAAGATTTTAAGAAGTGCACTAGAGAGAGTTTTAATAGTTGAGGAAGTTCAAAATGAGAATTTTGACTTAAAGAGACAGATTGAAATCTGCCAGGAGGAGATCAAAATCTTAGAGAAAACACATCGTCAAAAGATTTTGGAAGTTGAAAAACTTAGCCAAACCATCCATGAACTGGAGGAGATCATCCTATCCAGTGGAGTCAATGCTAATGCCATTCGTGATTATCAGCGACAGATTTCTGAATTGCAAGAGGAGAAAAGGACACTGGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAGCCAACAGAGTTGCAACTGTTGTGGCTAATGAGTGGAAGGATGAGAATGACAAGGTCATGCCTGTCAAGCAATGGCTGGAAGAGAGAAGGATAATGCAGGCAGAGATGCAACGATTAAAAGATAAGCTAGCTATATCAGAGAGAACAGCAAAGGCAGAGTCACAATTGAAGGATAAACTGAAGCTGAGGTTAAAAACACTAGAAGAAGGCTTAAAGCATTTCTCAAATCACCCAGTCAGTTCAAATTCCGTGTCTGCAAAATCAGAAAAGTCTAAGATCTTAAGCTTCCTAACGACCAATAGCGGACTGAGAAACAGATCCACATCACAACCAAGGGGATCTGCTATTGGAAGCTCTTTGTTCCAAAAGTCAAATGCAAAAAGCAACACAGACAGTGTTACTGGGAGCCTAATACCAGGCAGCATTATGAAAAAGAAATATGGTTCGGCAGAAAATGTGTTGAAGAAAGGTATATGGGCATCAAGACACAAAGTTGCTGATAGTGATGAAAAAGAAAATGAGATGCAGGTGAACGCAGGCATGAATTCAAATAAATGCAATGATGAAAAAGAAGCAGCAGAAATTAAAACCAGTATTGATGATAATGACGACTCTAAAAGCAATAGCTGTAATGATTTAGGCAGCAATGATGTGGTCTCAGGTTTTTTATATGATAGGCTTCAAAAAGAGTTCATCAATTTGAGAAAGTCTTGTGAAATTAAAGAGAGTAATTTGCACACTAAAGATGAAGAAATAAAGATTCTCACTAAGAAAGTTGATGCATTGACAAAGGCTATGGAAATAGAGTGGAAAAAAATGAAAAGAGAAGCAGCTGCCAGAGAGAAGGAGGCTGCATCAACAAAATCAGATGATAACAGGAAACTCAGACGCTCAAACTCCTCTAGAAGGATGATATGA

>Glyma09g01556.1   sequence type=predicted peptide   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASEEIYGGEELSLVQPDPMGLQIDRLHNQLTEKVKELANCQSEIKALRATEAKKDKAIEELRNEVGKLDDKLRLTEDHLKHKKLEIKKLTEEKKDALAAQYAAEATLRRLHADQKEDDFVPLESVITPLEAEIKMYRNEIASLQEDKKALERLTKSKEAALLEAEKILRSALERVLIVEEVQNENFDLKRQIEICQEEIKILEKTHRQKILEVEKLSQTIHELEEIILSSGVNANAIRDYQRQISELQEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVKQWLEERRIMQAEMQRLKDKLAISERTAKAESQLKDKLKLRLKTLEEGLKHFSNHPVSSNSVSAKSEKSKILSFLTTNSGLRNRSTSQPRGSAIGSSLFQKSNAKSNTDSVTGSLIPGSIMKKKYGSAENVLKKGIWASRHKVADSDEKENEMQVNAGMNSNKCNDEKEAAEIKTSIDDNDDSKSNSCNDLGSNDVVSGFLYDRLQKEFINLRKSCEIKESNLHTKDEEIKILTKKVDALTKAMEIEWKKMKREAAAREKEAASTKSDDNRKLRRSNSSRRMI*

>Glyma09g01556.2   sequence type=predicted peptide   gene model=Glyma09g01556   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASEEIYGGEELSLVQPDPMGLQIDRLHNQLTEKVKELANCQSEIKALRATEAKKDKAIEELRNEVGKLDDKLRLTEDHLKHKKLEIKKLTEEKKDALAAQYAAEATLRRLHADQKEDDFVPLESVITPLEAEIKMYRNEIASLQEDKKALERLTKSKEAALLEAEKILRSALERVLIVEEVQNENFDLKRQIEICQEEIKILEKTHRQKILEVEKLSQTIHELEEIILSSGVNANAIRDYQRQISELQEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVKQWLEERRIMQAEMQRLKDKLAISERTAKAESQLKDKLKLRLKTLEEGLKHFSNHPVSSNSVSAKSEKSKILSFLTTNSGLRNRSTSQPRGSAIGSSLFQKSNAKSNTDSVTGSLIPGSIMKKKYGSAENVLKKGIWASRHKVADSDEKENEMQVNAGMNSNKCNDEKEAAEIKTSIDDNDDSKSNSCNDLGSNDVVSGFLYDRLQKEFINLRKSCEIKESNLHTKDEEIKILTKKVDALTKAMEIEWKKMKREAAAREKEAASTKSDDNRKLRRSNSSRRMI*







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