Glyma08g17170 - SoyBase

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Report for Sequence Feature Glyma08g17170

Feature Type:	gene_model
Chromosome:	Gm08
Start:	12609458
stop:	12622436
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31900	AT	Annotation by Michelle Graham. TAIR10: myosin-like protein XIF \| chr2:13560760-13569623 REVERSE LENGTH=1556	SoyBase	E_val: 0	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0016459	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: myosin complex	SoyBase	N/A	ISS
GO:0016461	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: unconventional myosin complex	SoyBase	N/A	ISS
GO:0003774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: motor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0160	KOG	Myosin class V heavy chain	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF36	Panther	MYOSIN I, HIGH MOLECULAR WEIGHT FORM	JGI		ISS
PF00063	PFAM	Myosin head (motor domain)	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
PF01843	PFAM	DIL domain	JGI		ISS
PF02736	PFAM	Myosin N-terminal SH3-like domain	JGI		ISS
UniRef100_G7IQR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin XI-F n=1 Tax=Medicago truncatula RepID=G7IQR6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338B6B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338B6B related cluster n=1 Tax=unknown RepID=UPI0002338B6B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g17170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17170

Paralog	Evidence	Comments
Glyma15g42030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g161500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17170

Limit To All Plant Sequences

>Glyma08g17170.1   sequence type=CDS   gene model=Glyma08g17170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACACCTGTGAACATCATCGTTGGATCACAGGTTTGGGTTGAGGATCCTGAGGATGCATGGATTGATGGTGAGGTGACACAAATCAAAGGCAAAAATGCCACCATCATTGCCACAAATGGGAAAACTGTGGTGGCAGAAATTTCAAGCATATACCCCAAAGATACAGAGGCACCACCTGCAGGAGTTGATGACATGACCAAGCTAGCATACCTTCATGAGCCAGGAGTCCTGCATAACCTTGCAACTCGTTTTTCTCTCAATGAGATATATACATATACAGGGAATATCTTAATTGCAGTGAATCCTTTTCGAAGACTGCCGCATTTGTATGACATCCATATGATGGAGCAGTACAAAGGAGCAGCATTTGGAGAGCTTAGTCCTCACCTTTTTGCTGTAGCTGACACATGTTACAGGGCAATGATAAATGAAAATGGAAGCCAATCCATTTTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACTGAGACAACGAAAATGCTCATGAGATATCTAGCATTCATGGGGGGTAGATCTGCTACAGAAGGAAGAACTGTAGAACAACAGGTTTTGGAGTCAAATCCAGTGTTGGAAGCATTTGGAAATGCCAAAACTGTCAAAAACAACAACTCAAGTCGTTTTGGTAAATTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCTGGAGCTGCAATCCGTACATATCTCCTCGAAAGATCACGAGTTTGCCAGGTCTCTGATCCAGAGAGAAACTACCATTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGATGTCAAGAAGTACAAGTTAGGGGATCCAAGGCAATTCCACTATCTTAATCAATCAAACTGTTATCAAGTATCGAATGTGGATGATGCAAAAGAATACTTGGAGACCAGAAATGCAATGGATATTGTAGGCATTAGCCAAGAAGAGCAGGATGCGATCTTCCGTGTGGTAGCCGCAATCCTCCATCTTGGAAATGTTGACTTTGTCAAAGGGAAAGAAGTTGATTCTTCCAAATTGAAAGATGATAAATCACTCTTCCACCTCCAAACAGCCGCAGATTTATTCATGTGTGATGCGAAAGCACTGGAAGACTCACTTTGCGAGCGTGTCATTGTAACTCCTGATGGTAACATTACCAAACCTCTTGACCCAGATGCAGCTGCTTTGAGCCGAGATGCCTTGGCAAAGACTGTCTACTCCAAATTGTTTGATTGGATTGTGGACAAGATTAACAGTTCAATTGGTCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGATATTTATGGATTTGAAAGCTTCAAAATCAACAGTTTTGAGCAACTATGCATCAACCTAACGAATGAGAAGTTGCAACAACATTTTAATCAGCATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATCAATTGGAGCTATGTAGAATTTGTGGATAATCAGGATGTTCTCGATCTTATTGAGAAGAAACCAGGGGGAATTATTGCTCTTCTTGATGAAGCCTGCATGTTCCCTAAATCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATATAAAGGACACAAGCGCTTCAGCAAGCCAAAACTTTCTCGAACAAATTTCACAATTAACCATTATGCTGGAGATGTCACATATCAAGCAGATTATTTTCTTGATAAAAACAAAGATTATGTTGTAGCAGAGCATCAAGCTCTTTTATGTGCTTCCAAGTGTTCATTTGTTGCTAATATCTTCCCTCCTTTACCAGAGGAGACATCAAAGCAATCAAAATTCTCTTCCATTGGTTCACAATTTAAGCAACAACTGCAATCTCTCATGGAGACACTGAACACAACAGAGCCGCATTACATAAGATGTGTGAAACCAAATACAGTTCTGCAGCCAGGAATCTTTGAGAACTTCAATGTCTTGAACCAACTAAGATGTGGGGGAGTACTTGAGGCAATAAGGATTAGTTGTGCTGGATATCCAACAAAAAGGACATTTGAAGAATTTCTTGATCGCTTTGGAATGCTAGTTCCTGATGTCCTTGATGGCTCTGATGAGAAAAAGGCATCTATGGCCATCTGTGATAAGATGGGTTTAAAAGGCTATCAAATGGGGAAAACAAAGGTATTTCTCAGAGCTGGTCAGATGGCTGAATTAGATGCACGACGAGCCGAAGTCTTAGCTAAAGCGGCCAAACTCATACAGAGACAAATCCGAACACATTTAACGAGAAAGGAGTTTATCACCTTGAGAAAGGCCACTATTCATATCCAAAAGATTTGGAGAGCTAAACTTGCACGTAAACTCTATGAGAATATGAGGAGGGAAGCAGCTTCTATCAGGATACAGAAACACGTGCGTGCACACAGAGCAAGAATGAATTATACAACGTTACAAGCATCAGCTATAGTTATTCAATCAGGTTTGAGAGCATTAGCAGCAAGAAATGAATATAGGTACAGAAGAAGAACAAAGGCTTCAACAAAAATTCAGACACAATGGAGAAGAGCCCAAGCTCTTTCTGGTTACAAACAGCAGAAGAAAGCAACTGTTGCACTTCAATGTCTATGGAGAGCTAAAGTAGCAAGGAAAGAGCTCAGAAAGCTTCGGATGGCTGCAAGAGAAACTGGGGCACTTAAGGAAGCAAAGGACAAGTTGGAGAAGCGTGTTGAGGAGCTTACATGGCGACTGGATATTGAAAAGCACATGAGGACAGATCTTGAAGAAGCTAAAGGGCAAGAGATTGCAAAATTGCAAAATGCTTTACAAGAAATGCAAGGTCAGTTAGATGAAGCCCATGCTGCAATTATACATGAGAGAGAAGCAGCAAAAATAGCAATTGAACAAGCACCACCAGTAATTAAAGAGGTACCTGTTGTGGACAACACAAAGCTAGATTTACTGACAAATAAAAATGAGGAGTTGGAGACTGAAGTAGAAGAGCTGAAAAACAAGATTAAAGACTTTGAAGAAAGGTTCTCAGAAGTCGAGAACGAGAACCAAGAAAGGCTGAAAGAGGCAGAAGAAGCACAGCTTAAAGCAACACAACTTCAGGAGACTATTGAAAGATTAGAATTGAGTTTGTCAAACCTTGAGTCTGAGAACCAGGTTCTATGCCAGAAGGCTTTGGAAGAATCAAAAAATGAAGAACTCTTTGAAGAGATCAAAATCCTCAAGGATCAGATAGCAAATCTAGAATCAGAGAATGAATCCCTACGGAGGCAGGCAGCGGCTGTTGCTTTCGAGCAGAAAGTTCATCCAGAAAAAATAGAATCAGACCATTCAGCAGCTTCTTTGGAGCAGAAAGTTCAACCAGAAAAAATAGAACCAGGCCATTCAGCAACTGCTTTAGAGCAGAAAGTTAATCCAGAAAAAATAGAACCAGTCCATTCAGCAACTGCTTTGGAGCAGAAAGTTCATCCAGAAAAAATAGAACCAGATCATTCAGCAGCTGCTCTAGAGCAGAAAGTTCATCCAGAAAAAATAGAACCAGACCATGAAGTTGCTGTTGCAGAGAAAATGCAAGTGCAACCAAGAGTTATTGCAGATAATATGACTTCACAAATCAAGAATTTGGATAATGGAAGTTCAACCGAGGAAGAATGGCAAGCAAGAAAAGAACCGAGAGCACCAGTCTTCTTGCTTACTAAACAAAGATCACTCACAGATAGGCAACAGGAAAGTCATGATGCACTGCTCAAGTGTCTTACGGAAGATAAGCGATTTGAGAAAAACAGACCAGCTGTTGCTTGTATTGTATATAAATCACTTCTTCATTGGAGATCCCTTGAAGCAGAAAAGACTCATATTTTTGATAAAATTACACATGCTATCCGATCATCTATAGAGAGTCAAGAAGGAATCCATGATCTAGCCTACTGGCTTTCAACAACATCAACACTTCTGTTTTATCTACAATGTACAATGAAGGCCAGCAATACAACTAAGGCAGTGTCACGTAATCGAAACTCGCCCGCCTCTTTGTTTGGCAAAATGGCACAAGGTTTACGTTCATCTTCAATGGGCTTGGGGATTTCAAGTGGCTACAGTGGAATGGTGGACAAGACAAATGGTCAATCTAAAGTAGAAGCCAAGTACCCGGCAATTCTGTTTAAGCAACATTTAACTGCATATGTTGAGAAGATATATGGAATGATCCGTGATAGTTTAAAGAAAGAGATTAGCCCCTTCTTAAATCTGTGTATACAGGCACCAAGATCCATAAGGACTAGATCAATAAGAGGGTCATCCAGAAACATCCATTCAAATATTGTTGCAAAACAACAGGCATTGCATATGTACTGGAAAGGCATTGTGGACAAGCTAGATACTGCCTTGCGTATATTGTCTGATAACTATGTTCCTCCCATCATAACAAGGAAGATATTTAGTCAGGTTTTCTCATTCATGAATGTCCAGCTCTTTAATAGTTTGTTGCTTCGCCGTGAGTGTTGTTCCTTTAGCAATGGAGAATATTTGAAGGCAGGTTTGCATGAGTTGGAACTATGGTGTCTTAAAGCAACAGACCAGTTTGCTGGATCATCTTGGGATGAGCTCAAACACATACGCCAGGCTGTGGGCTTTCTGGTTTTGCATCAAAAGACCCAAAAATCTTTGGAGGAGATCACAAATGAGCTCTGCCCGGTGTTAAGTATTCCACAAATATATCGTATAGGAACTATGTTCTGGGATGACAAGTATGGAGCACATGGATTATCTGCAGAAGTCATTAGCAGAATGAGAGTGATTATGACAGAAGACTCAATAAACATACACAACAGCTCATTCCTTCTAGAGGTGGATTCCAGCATACCATTCTTAATGGAGGAGATGTTCCGGTCAATGAGTGACATCCGCCTATCAGACATGGATGTGGATCCACCACCAATCCTCAGGCAAAGATCTGACTTCCAATTCTTGTTGCAACAAATGGATAGTGACTCTCAGTGA

Predicted protein sequences of Glyma08g17170

Limit To All Plant Sequences

>Glyma08g17170.1   sequence type=predicted peptide   gene model=Glyma08g17170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTPVNIIVGSQVWVEDPEDAWIDGEVTQIKGKNATIIATNGKTVVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLATRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSATEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRQFHYLNQSNCYQVSNVDDAKEYLETRNAMDIVGISQEEQDAIFRVVAAILHLGNVDFVKGKEVDSSKLKDDKSLFHLQTAADLFMCDAKALEDSLCERVIVTPDGNITKPLDPDAAALSRDALAKTVYSKLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLSRTNFTINHYAGDVTYQADYFLDKNKDYVVAEHQALLCASKCSFVANIFPPLPEETSKQSKFSSIGSQFKQQLQSLMETLNTTEPHYIRCVKPNTVLQPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLVPDVLDGSDEKKASMAICDKMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAAKLIQRQIRTHLTRKEFITLRKATIHIQKIWRAKLARKLYENMRREAASIRIQKHVRAHRARMNYTTLQASAIVIQSGLRALAARNEYRYRRRTKASTKIQTQWRRAQALSGYKQQKKATVALQCLWRAKVARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLDIEKHMRTDLEEAKGQEIAKLQNALQEMQGQLDEAHAAIIHEREAAKIAIEQAPPVIKEVPVVDNTKLDLLTNKNEELETEVEELKNKIKDFEERFSEVENENQERLKEAEEAQLKATQLQETIERLELSLSNLESENQVLCQKALEESKNEELFEEIKILKDQIANLESENESLRRQAAAVAFEQKVHPEKIESDHSAASLEQKVQPEKIEPGHSATALEQKVNPEKIEPVHSATALEQKVHPEKIEPDHSAAALEQKVHPEKIEPDHEVAVAEKMQVQPRVIADNMTSQIKNLDNGSSTEEEWQARKEPRAPVFLLTKQRSLTDRQQESHDALLKCLTEDKRFEKNRPAVACIVYKSLLHWRSLEAEKTHIFDKITHAIRSSIESQEGIHDLAYWLSTTSTLLFYLQCTMKASNTTKAVSRNRNSPASLFGKMAQGLRSSSMGLGISSGYSGMVDKTNGQSKVEAKYPAILFKQHLTAYVEKIYGMIRDSLKKEISPFLNLCIQAPRSIRTRSIRGSSRNIHSNIVAKQQALHMYWKGIVDKLDTALRILSDNYVPPIITRKIFSQVFSFMNVQLFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDQFAGSSWDELKHIRQAVGFLVLHQKTQKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGAHGLSAEVISRMRVIMTEDSINIHNSSFLLEVDSSIPFLMEEMFRSMSDIRLSDMDVDPPPILRQRSDFQFLLQQMDSDSQ*

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