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Report for Sequence Feature Glyma07g32283

Feature Type:gene_model
Chromosome:Gm07
Start:37193049
stop:37194746
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24010AT Annotation by Michelle Graham. TAIR10: cellulose synthase like G1 | chr4:12466391-12469760 FORWARD LENGTH=760 SoyBaseE_val: 4.00E-48ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0006863GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016759GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity SoyBaseN/AISS
GO:0016760GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PTHR13301:SF23Panther JGI ISS
PF03552PFAM Cellulose synthase JGI ISS
UniRef100_B9STK2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase, putative n=1 Tax=Ricinus communis RepID=B9STK2_RICCO SoyBaseE_val: 1.00E-90ISS
UniRef100_UPI0002338344UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338344 related cluster n=1 Tax=unknown RepID=UPI0002338344 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g32283 not represented in the dataset

Glyma07g32283 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g24270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g202000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g32283.1   sequence type=CDS   gene model=Glyma07g32283   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCCTTCCTCTGAATACCATCCATGTCCAAAACCTATTAGTTATCATCAATAGGTTACACATGCTACTCCACTCCACTGCACTAGCCTTCTTGTTCTATTACAGACTGTGCTTTCTTTTCCAACCCTCAGAAACAATAGAAAGCCACTCGTTACCATGGCTACTTGTTTTTGCTTCAGAGATCATTCTCTCCTTCATTTGGATCCTTGACCAAGCTTATCGTTGGCATCCCGTTTTGCGGTCCATTTTCCAGGAAAGATTGCTGGAGGATCACAAGCTTCCTTCTATTGATGTGTTCATATGCACTGCTGATCCAACCAAGGAGCCCACTTTGGATGTGATGAACACAGTTCTATCAGCCATGGCACTGGATTACCCTCCACAGAAACTTCATATGTATGTTTCGGATGAAGGAGGGTCTCCTTTGACTCTTCATGGGGTGAGGGAGGCTTCGAAGTTTGCTACGAGTAGTGTGTACATGGAAGATAAGCAAAAGATCAAGGAAAAGTACGAGGCTTTTAAAGAGGAGATAAAGACTTTCAGAAAAGATAGGACATTTTCCAGAGATCACCCTTCTGTCAATGAGGTGATGCAAGAAACTATCATTGATGATGCAGATAATGTCAAAATGCCTCTCCTTGTCTGTGTTTCTCGCGAGAAAAAGCCTTCTGATCCCCACCATTTCAAGGCTGGAGCATTCAATGTCCTTCTTCGTGCCTCTTCCGTGATGAGTAATTCTCCATACATTCTAGTTCTAGATTGTGACATGTTCTGTAATGATCCAACTTCAGCTTGA

>Glyma07g32283.1   sequence type=predicted peptide   gene model=Glyma07g32283   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METLPLNTIHVQNLLVIINRLHMLLHSTALAFLFYYRLCFLFQPSETIESHSLPWLLVFASEIILSFIWILDQAYRWHPVLRSIFQERLLEDHKLPSIDVFICTADPTKEPTLDVMNTVLSAMALDYPPQKLHMYVSDEGGSPLTLHGVREASKFATSSVYMEDKQKIKEKYEAFKEEIKTFRKDRTFSRDHPSVNEVMQETIIDDADNVKMPLLVCVSREKKPSDPHHFKAGAFNVLLRASSVMSNSPYILVLDCDMFCNDPTSA*







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