SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g16690

Feature Type:gene_model
Chromosome:Gm07
Start:16372117
stop:16376639
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g16690
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52240AT Annotation by Michelle Graham. TAIR10: RHO guanyl-nucleotide exchange factor 11 | chr1:19458844-19459235 REVERSE LENGTH=94 SoyBaseE_val: 1.00E-27ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0007017GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based process SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0080147GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005875GO-cc Annotation by Michelle Graham. GO Cellular Compartment: microtubule associated complex SoyBaseN/AISS
GO:0005089GO-mf Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity SoyBaseN/AISS
KOG3430 KOG Dynein light chain type 1 JGI ISS
PTHR11886Panther DYNEIN LIGHT CHAIN JGI ISS
PTHR11886:SF22Panther SUBFAMILY NOT NAMED JGI ISS
PF01221PFAM Dynein light chain type 1 JGI ISS
UniRef100_B9SV39UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytoplasmic dynein light chain, putative n=1 Tax=Ricinus communis RepID=B9SV39_RICCO SoyBaseE_val: 6.00E-29ISS
UniRef100_I1KK47UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KK47_SOYBN SoyBaseE_val: 5.00E-78ISS

Expression Patterns of Glyma07g16690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g16690 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g138900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g16690
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g16690
>Glyma07g16690.2   sequence type=CDS   gene model=Glyma07g16690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGAAGGAAAAGCTGTGGTGAGAGAGACAGACATGCCAGAGGGAATGCAGAGCTATGTTATGGAATTAGCACACCAAGCTCTCGATGCACATGAAGTTTCTGATTGTCAGTCCATTGCTCATTTCATCAAACAGAAACTTGATGAAGCATATGGACCTGCTTGGAATTCCGTGGTTGGAAAAGACTTTGGATCTTGCATCACACATTTATGTGGAAGTTTCATATTCTTTCGTGTGGAGATGATGGAATTTCTGATCTTCAAAGATGGGAAGAATTTCACAGAAAGCAGGGAAGAAGCTATTGGAGTGCTGCAGAAGGCTAGAAATTGTGATTAG
Predicted protein sequences of Glyma07g16690
>Glyma07g16690.2   sequence type=predicted peptide   gene model=Glyma07g16690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEGKAVVRETDMPEGMQSYVMELAHQALDAHEVSDCQSIAHFIKQKLDEAYGPAWNSVVGKDFGSCITHLCGSFIFFRVEMMEFLIFKDGKNFTESREEAIGVLQKARNCD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo