Report for Sequence Feature Glyma07g06240
Feature Type: gene_model
Chromosome: Gm07
Start: 4970058
stop: 4976345
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g06240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G63630 AT
Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25472598-25476402 REVERSE LENGTH=788
SoyBase E_val: 0 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0004386 GO-mf
Annotation by Michelle Graham. GO Molecular Function: helicase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008026 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity
SoyBase N/A ISS
KOG0342
KOG
ATP-dependent RNA helicase pitchoune
JGI ISS
PTHR24031 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24031:SF28 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00270 PFAM
DEAD/DEAH box helicase
JGI ISS
PF00271 PFAM
Helicase conserved C-terminal domain
JGI ISS
UniRef100_B9SBJ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SBJ5_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KHW2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KHW2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g06240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g06240
Paralog Evidence Comments
Glyma16g02880 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g06240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g056600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g06240
Coding sequences of Glyma07g06240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g06240.1 sequence type=CDS gene model=Glyma07g06240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCTACAAAGCTATTCTCCCAACTACATCTTCTCCATCCCCTCCTCCCCATGAAGCCCCGCACTCTCCCCCTTCTCTCCAGACCCTTCTTCTTCCCTTCCTCCAAGTTCCTCCGAACCTCACCGTTTAAGGTTCGCGCCTTCTCCTCCCGGGAGAAGGTTCCCCTCCGCCCCTCCAAGAGCCTCATCGACGACGAGGCCGACCTCAGCAACTGGGTTGACGAATTGCGCTCCGGCGGGCCCGATGAAATGCGGTCTGGCCGGGGCAATGAAGTGCGGACCGGTCGGAGAGACCGGTTTGCCGATTCTGGCCGGTTCAGCCGCGATGACAGGGAACGCGAATTCCGGCCGCCGAGGAATAATAACCGGGCTTCCGCGTTGGGGAAGAGAAGGGGCGAGGATTTGAGGAAGGGGGGACAGAGTGTCGGTTCGAGGAGAAAGTTTCAACCGAGGAGTGATGATGATGATAACGAGGTAATGAATGGAAGAAAGTTGAAGGGTGGTGGCGTTGGAGCCTTTCCTAGCGAGGATGAGGATGAAGATGAAGACGAAGAGAGTGAAGGGAGTGAGGAGGAAGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGTTTTGAACCGGAGGAACACCGAACCAACTCCAAGACCTTCTTCTCCTGGAGGAGGATCTGATTCTTATTTGAGTGAAACCAGATTTGACCAATGTTCAATCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACGGTTGTTCAGGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACCGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTGGCAAAGTCACCTCCAAGTGATCGTGATCATAGGCGGCCACCAATTGCTGTTCTTGTCATATGCCCAACTCGAGAACTTGCAAGTCAAGCTGCTGCAGAGGCCACTAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGGACAAGACTTGCGTTAGAGCAGAAACGAATGCAAGCAAACCCCTGCCAAATCCTTGTTGCCACACCTGGAAGGCTTAGAGATCATACTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCGGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACGGAGGAGACACATTCACAGGTCTGCCAGACGCATTTAGTTGCCCCATTGGACAAGCATTTCTCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTCCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTACAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATAGACTCGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGACTTCTTTTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCTGTAGTACCTTCAGTTGATCCTGACACCAAGAAAAAGGTGGAAAAAGCCCTATCCAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCGTGGCTTGGTTACTACAATTCCAACAAAAAAGTGGGGCGTGACAAGTACAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATACCTAAGCTAGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGGGCAAAATAG
Predicted protein sequences of Glyma07g06240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g06240.1 sequence type=predicted peptide gene model=Glyma07g06240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPTKLFSQLHLLHPLLPMKPRTLPLLSRPFFFPSSKFLRTSPFKVRAFSSREKVPLRPSKSLIDDEADLSNWVDELRSGGPDEMRSGRGNEVRTGRRDRFADSGRFSRDDREREFRPPRNNNRASALGKRRGEDLRKGGQSVGSRRKFQPRSDDDDNEVMNGRKLKGGGVGAFPSEDEDEDEDEESEGSEEEEILNKSRTALFGQQNVLNRRNTEPTPRPSSPGGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPSDRDHRRPPIAVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVCQTHLVAPLDKHFSLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEDFFLSTVKDLPIEKAPVVPSVDPDTKKKVEKALSNVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK*
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