Glyma07g01270 - SoyBase

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Report for Sequence Feature Glyma07g01270

Feature Type:	gene_model
Chromosome:	Gm07
Start:	807801
stop:	812768
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g01270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55160	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:20578476-20579803 FORWARD LENGTH=188	SoyBase	E_val: 3.00E-24	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KGC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGC9_SOYBN	SoyBase	E_val: 4.00E-120	ISS

Expression Patterns of Glyma07g01270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g01270

Paralog	Evidence	Comments
Glyma08g20680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g01270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g010600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g01270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g01270

Limit To All Plant Sequences

>Glyma07g01270.4   sequence type=transcript   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATTGTGGAAAATCAAATCAAATCTGTTGTTTTGATTCAAAGTTTGTGGCTTTGGTAACAGCGCGATTGAAGCAGTTTCGGGGGCAACAGAAATCAAACGCGTTCTCCTCGCCGGCGGCGATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGGAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAATGATGTTATCTTTATCGTCAGGGAAAAAAGTTCTTGAATTCAAATGTACTTGAATTGATTCATCCAATGCTTTTATTTTCTGTTGGTTTTTTGTTGGATTCTAGATTATAGATTTGTGAATTTGAGAGTTCAGGGTCCTGACATCCTAAATTGTCATTTGCAGAATTTTGGATGTGGTTCGCTGGTTCTTTTGGTTCTGACAATAATACAAGTTGATGGCACTTGATTTACAATGTCCATGTTCTTTTTTACCTATAGATGTCATTTGGATTTTCAATATATTTATTGGTTTTGTGAATAAAGCCAAATTTGAGTTAGAGACTCAGCACATGGCAAGTGCAGAGGCTGGTGAGCAGTGTTGCTTAGCTAATTTAAAGCACTAAGGTGAGGGTACTAATTAAATTGTCCAAAGGCAATGAAATTTTATTGAATTTAAGTATTCACTCTTAAGCTATGAAGCACAGACACCCATTCCCTTTCTGTGTCCGAGTGTTCGATACGTGTCCGGATGTTCGACATGTGTCTGTGTCTGACACGACATCGACACTGACAAGTAAATCAACATTCCATTAACTTTTTTAAGAGGTGAGGTGTCCACGTGTTTGTGTTCGTGTTGTGTCCGGTGTCTGTGTCAGTGTCGGTGTTTCATAGCTCTTAAGTTCCTTCCATGAAAAACATTCTGCATGGATCTAGGAATAG

>Glyma07g01270.5   sequence type=transcript   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTTTTCAAACTCCCTCCCATCAATGGTTGAAGTTAAAGAAGGTGTAAATTAAAAAGAGAAAAAAAGTGACTGATTGCGTATATGCATGGGAAACAGTGTCTAGCAGAGTAGAGTTAAGAATTGAAATTTGAAAGGATTGAATGGTGAAATGAAGAGGTAGTGAGAGACAAGAAAAGAAAAGAATGAGTGAAGAAGGTCCTCCAAAGCTATATACCGACAAGCCCCGAAAAGCGCGATTGAAGCAGTTTCGGGGGCAACAGAAATCAAACGCGTTCTCCTCGCCGGCGGCGATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGGAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAATGATGTTATCTTTATCGTCAGGGAAAAAAGTTCTTGAATTCAAATAATTTTGGATGTGGTTCGCTGGTTCTTTTGGTTCTGACAATAATACAAGTTGATGGCACTTGATTTACAATGTCCATGTTCTTTTTTACCTATAGATGTCATTTGGATTTTCAATATATTTATTGGTTTTGTGAATAAAGCCAAATTTGAGTTAGAGACTCAGCACATGGCAAGTGCAGAGGCTGGTGAGCAGTGTTGCTTAGCTAATTTAAAGCACTAAGGTGAGGGTACTAATTAAATTGTCCAAAGGCAATGAAATTTTATTGAATTTAAGTATTCACTCTTAAGCTATGAAGCACAGACACCCATTCCCTTTCTGTGTCCGAGTGTTCGATACGTGTCCGGATGTTCGACATGTGTCTGTGTCTGACACGACATCGACACTGACAAGTAAATCAACATTCCATTAACTTTTTTAAGAGGTGAGGTGTCCACGTGTTTGTGTTCGTGTTGTGTCCGGTGTCTGTGTCAGTGTCGGTGTTTCATAGCTCTTAAGTTCCTTCCATGAAAAACATTCTGCATGGATCTAGGAATAG

>Glyma07g01270.6   sequence type=transcript   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAGACAAAAACAAATAAAACCTAATATAAATTAGGTTATAAGTCCCTTTCTAGTTACTTCATTATGGAATGATCCATTTTTTCAAACTCCCTCCCATCAATGGTTGAAGTTAAAGAAGGTGTAAATTAAAAAGAGAAAAAAAGTGACTGATTGCGTATATGCATGGGAAACAGTGTCTAGCAGAGTAGAGTTAAGAATTGAAATTTGAAAGGATTGAATGGTGAAATGAAGAGGTAGTGAGAGACAAGAAAAGAAAAGAATGAGTGAAGAAGGTCCTCCAAAGCTATATACCGACAAGCCCCGAAAAGCGCGATTGAAGCAGTTTCGGGGGCAACAGAAATCAAACGCGTTCTCCTCGCCGGCGGCGATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGGAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAATGATGTTATCTTTATCGTCAGGGAAAAAAGTTCTTGAATTCAAATGTACTTGAATTGATTCATCCAATGCTTTTATTTTCTGTTGGTTTTTTGTTGGATTCTAGATTATAGATTTGTGAATTTGAGAGTTCAGGGTCCTGACATCCTAAATTGTCATTTGCAGAATTTTGGATGTGGTTCGCTGGTTCTTTTGGTTCTGACAATAATACAAGTTGATGGCACTTGATTTACAATGTCCATGTTCTTTTTTACCTATAGATGTCATTTGGATTTTCAATATATTTATTGGTTTTGTGAATAAAGCCAAATTTGAGTTAGAGACTCAGCACATGGCAAGTGCAGAGGCTGGTGAGCAGTGTTGCTTAGCTAATTTAAAGCACTAAGGTGAGGGTACTAATTAAATTGTCCAAAGGCAATGAAATTTTATTGAATTTAAGTATTCACTCTTAAGCTATGAAGCACAGACACCCATTCCCTTTCTGTGTCCGAGTGTTCGATACGTGTCCGGATGTTCGACATGTGTCTGTGTCTGACACGACATCGACACTGACAAGTAAATCAACATTCCATTAACTTTTTTAAGAGGTGAGGTGTCCACGTGTTTGTGTTCGTGTTGTGTCCGGTGTCTGTGTCAGTGTCGGTGTTTCATAGCTCTTAAGTTCCTTCCATGAAAAACATTCTGCATGGATCTAGGAATAGAAGACCGTCATTGATTAGATTATTTCAAATTAGTTGTTGGATGACACCATTTCTATTAGAATCTCAAATCTCATTATATAAATAGAAAAGGTGAGAGGTTTTCTGAATAATAATTTTATGGTTGTG

Coding sequences of Glyma07g01270

Limit To All Plant Sequences

>Glyma07g01270.3   sequence type=CDS   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAGAAGGTCCTCCAAAGCTATATACCGACAAGCCCCGAAAAGCGCGATTGAAGCAGTTTCGGGGGCAACAGAAATCAAACGCGTTCTCCTCGCCGGCGGCGATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAATGATGTTATCTTTATCGTCAGGGAAAAAAGTTCTTGA

>Glyma07g01270.4   sequence type=CDS   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGGAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAA

>Glyma07g01270.5   sequence type=CDS   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAGAAGGTCCTCCAAAGCTATATACCGACAAGCCCCGAAAAGCGCGATTGAAGCAGTTTCGGGGGCAACAGAAATCAAACGCGTTCTCCTCGCCGGCGGCGATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGGAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAA

>Glyma07g01270.6   sequence type=CDS   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAGAAGGTCCTCCAAAGCTATATACCGACAAGCCCCGAAAAGCGCGATTGAAGCAGTTTCGGGGGCAACAGAAATCAAACGCGTTCTCCTCGCCGGCGGCGATGGGGACACACGCCGCTACTCCGCCGCCACCTCCGCCACCGCCAAAGGAACCCTTTATTCGGCGCTACAAATTCGTTTGGCCTATGCTTTTGGCTGTGAATCTTGGTGTCGCAGCTTATTTGTTTACGAGGACAAAGAAGAAGGGTACTGGTGAGGAGGAGCAAGATGTAACTCGTGTCTCAACTAAGGATGCTACCCCTCATGTTGTTGAGATGCCTGTGCCGCCACCATCTATTACAAATCCCATGATCAAACGAGAGCCAATTCCAGAAAACGAACAATGTGAACTCTTGAAGTGGATATTGGAAGAGAAGAGGAAGGTCAAAGCAAAAGACGCAGAGGAGAAGCGGAAAATTGATGAAGAGAAAGCTCTGCTTAAAAAGCTTATTCGGTCAAAATCCATCCCAAGTGTCTAA

Predicted protein sequences of Glyma07g01270

Limit To All Plant Sequences

>Glyma07g01270.3   sequence type=predicted peptide   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEEGPPKLYTDKPRKARLKQFRGQQKSNAFSSPAAMGTHAATPPPPPPPPKEPFIRRYKFVWPMLLAVNLGVAAYLFTRTKKKGTGEEEQDVTRVSTKDATPHVVEMPVPPPSITNPMIKREPIPENEQCELLKWILEEKRKLCLKSLFGQNPSQVSNDVIFIVREKSS*

>Glyma07g01270.4   sequence type=predicted peptide   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTHAATPPPPPPPPKEPFIRRYKFVWPMLLAVNLGVAAYLFTRTKKKGTGEEEQDVTRVSTKDATPHVVEMPVPPPSITNPMIKREPIPENEQCELLKWILEEKRKVKAKDAEEKRKIDEEKALLKKLIRSKSIPSV*

>Glyma07g01270.5   sequence type=predicted peptide   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEEGPPKLYTDKPRKARLKQFRGQQKSNAFSSPAAMGTHAATPPPPPPPPKEPFIRRYKFVWPMLLAVNLGVAAYLFTRTKKKGTGEEEQDVTRVSTKDATPHVVEMPVPPPSITNPMIKREPIPENEQCELLKWILEEKRKVKAKDAEEKRKIDEEKALLKKLIRSKSIPSV*

>Glyma07g01270.6   sequence type=predicted peptide   gene model=Glyma07g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEEGPPKLYTDKPRKARLKQFRGQQKSNAFSSPAAMGTHAATPPPPPPPPKEPFIRRYKFVWPMLLAVNLGVAAYLFTRTKKKGTGEEEQDVTRVSTKDATPHVVEMPVPPPSITNPMIKREPIPENEQCELLKWILEEKRKVKAKDAEEKRKIDEEKALLKKLIRSKSIPSV*

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