Glyma06g24830 - SoyBase

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Report for Sequence Feature Glyma06g24830

Feature Type:	gene_model
Chromosome:	Gm06
Start:	22604193
stop:	22606284
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g24830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57340	AT	Annotation by Michelle Graham. TAIR10: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) \| chr3:21219175-21220278 FORWARD LENGTH=367	SoyBase	E_val: 3.00E-143	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0714	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24077	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24077:SF92	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF09320	PFAM	Domain of unknown function (DUF1977)	JGI		ISS
UniRef100_B9SEQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein HLJ1, putative n=1 Tax=Ricinus communis RepID=B9SEQ7_RICCO	SoyBase	E_val: 2.00E-148	ISS
UniRef100_I1KDB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDB5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g24830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g24830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g217000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g24830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g24830

Limit To All Plant Sequences

>Glyma06g24830.1   sequence type=CDS   gene model=Glyma06g24830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGGAACAAGGACGACGCGTTGAAATGTTTAAGAATCGGCAAAGAGGCGATGGAAAGCGGCGATCGGTCACGCGCTTTGAAGTTCGTGACGAAGGCGCGTCGCCTCGACCCCACTCTCCCCGTCGACGATCTATTGTCCACGATAGAGGTGGATGCAGGGGATCAGGCCCCCGCCGCCGAGGCGGAGGGCCCCACGAAGCCCACTGATCAACCTTCTATCCGCCGGAGGGCCACCGGGGCGGCTGCGACCGTCTCGGCCGGGCCCTCGTCGGCCTCGTCCTCTTCGGCCTCGTACACCGAAGAGCAAGTCTCAATTATTAGGGAAATTAAGAGGAAGAAAAACTTTTATGAGATATTGGGATTGGAGAAGACTTGCACTGTTGAGGATGTGAGGAAATCGTACAGGAAACTGTCTCTTAAGGTTCATCCCGATAAGAACAAAGCCCCTGGTGCCGAGGAAGCATTCAAGGCCGTTTCAAAGGCGTTTCAGTGTCTTAGTAATGAAGAGAGTAAGAGAAAGTATGATGTTTCGGGTGAGGATGAAGCGGTTTACGAGCAGCGTGCGGCAAGGCCGGCGGCCCGAGGTTATAATGGTTACTATGAGGCTGATATTGATGCTGAGGAGATATTCAGGAACTTCTTTGGAGGAATGGCCCCTGCAGCCAATTTTGGAGGATTCAGTTTTGGACCAGCTGGTTTCAATGGGTTCAATGGTCATAGGCATGCTGCTGATCATGGTTCTGGTGGTTTTAATGTTCGCGCTTTAATTCAGTTGCTGCCTGTGCTGCTGATTGTGTTATTGAACTTTTTGCCTTCATCGGAGCCCTTGTACTCGCTTTCGAAGAGTTATCCTTATGAACATCGGTTTACCACACCCAAGGGTGTTAACTATTATGTCAAGTCTACAAACTTTGTTCAGGAGTATCCGTTGGGGAGTGATGAACGATCAAAAATTGAAGAGAGGGTAGAGAGGGAGTACTTCAGCATTCTCCGCCAGAATTGTCATTTCGAGTTGCAGCGTCGCCAATGGGGGTATATCCGGGAAACACCCCATTGTGATATGTTGCGGAAGTTTGAGGTGGTGAATTGA

Predicted protein sequences of Glyma06g24830

Limit To All Plant Sequences

>Glyma06g24830.1   sequence type=predicted peptide   gene model=Glyma06g24830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGNKDDALKCLRIGKEAMESGDRSRALKFVTKARRLDPTLPVDDLLSTIEVDAGDQAPAAEAEGPTKPTDQPSIRRRATGAAATVSAGPSSASSSSASYTEEQVSIIREIKRKKNFYEILGLEKTCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESKRKYDVSGEDEAVYEQRAARPAARGYNGYYEADIDAEEIFRNFFGGMAPAANFGGFSFGPAGFNGFNGHRHAADHGSGGFNVRALIQLLPVLLIVLLNFLPSSEPLYSLSKSYPYEHRFTTPKGVNYYVKSTNFVQEYPLGSDERSKIEERVEREYFSILRQNCHFELQRRQWGYIRETPHCDMLRKFEVVN*

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