Report for Sequence Feature Glyma06g22440
Feature Type: gene_model
Chromosome: Gm06
Start: 19255404
stop: 19258816
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g22440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G08900 AT
Annotation by Michelle Graham. TAIR10: reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362
SoyBase E_val: 0 ISS
GO:0030244 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process
SoyBase N/A ISS
GO:0033356 GO-bp
Annotation by Michelle Graham. GO Biological Process: UDP-L-arabinose metabolic process
SoyBase N/A ISS
GO:0071555 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall organization
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030054 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell junction
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008466 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glycogenin glucosyltransferase activity
SoyBase N/A ISS
GO:0016758 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups
SoyBase N/A ISS
GO:0016866 GO-mf
Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity
SoyBase N/A ISS
GO:0052691 GO-mf
Annotation by Michelle Graham. GO Molecular Function: UDP-arabinopyranose mutase activity
SoyBase N/A ISS
PF03214 PFAM
Reversibly glycosylated polypeptide
JGI ISS
UniRef100_I1KD37 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD37_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q0PW29 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GRP-like protein 2 n=1 Tax=Gossypium hirsutum RepID=Q0PW29_GOSHI
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g22440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g22440
Paralog Evidence Comments
Glyma04g32080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g22440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g205600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g22440
Coding sequences of Glyma06g22440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g22440.1 sequence type=CDS gene model=Glyma06g22440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGTCGCCGGGAAGCGCAGCAGCAACGGCGATTCTGAAGGAAGAGGTGGACATAGTGATCCCTACGATACGTAACCTGGACTTCTTGGACATGTGGAGGCCATTCTTCGAGGGATACCATTTGATAATAGTGCAGGACGGTGATCCTTCGAAAGTTATCAAGGTTCCTGAAGGGTTTGATTATGAACTCTATAACCGCAACGACATCAACCGCGTTCTTGGCCCCAAGGCACACTGCATCTCCTTCAAAGACTCTGCTTGTCGCTGTTTCGGATTCTTGTTGTCTAAGAAGAAGTACATCTTCACCATTGATGATGACTGCTTCGTTGCAAAAGATCCTTCTGGCAAAGAAATTAATGCCCTGGAGCAGCACCTCAAGAACCTTCTCAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGCGTAGATTTTGTCCGTGGATACCCATTTAGTCTGCGTGAAGGTGTTCCCACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTGGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCTGTTATGACTATCCCAAAGGGGACCCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAACTAATTGGTCCTGCAATGTACTTTGGACTCATGGGTGATGGTCAACCTATTGGACGTTATGATGACATGTGGGCTGGTTGGTGCGTCAAGGTGATAAGTGATCATCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCCAGCAACCCATTTGTAAACCTAAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTCTTCCAAAGGAATGCACGACTGCTCAGAAATGTTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTGACATGGATTGAAGCTTGGGATGAACTAAACCCATCTGGGCCAAAATCTGAAGCATTGCCCAATGGTTCAGCAAAGTAA
Predicted protein sequences of Glyma06g22440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g22440.1 sequence type=predicted peptide gene model=Glyma06g22440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSPGSAAATAILKEEVDIVIPTIRNLDFLDMWRPFFEGYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRVLGPKAHCISFKDSACRCFGFLLSKKKYIFTIDDDCFVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGVDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSLPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNPSGPKSEALPNGSAK*