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Report for Sequence Feature Glyma06g22160

Feature Type:gene_model
Chromosome:Gm06
Start:18912836
stop:18915769
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61010AT Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein E2 | chr5:24554612-24556531 FORWARD LENGTH=639 SoyBaseE_val: 4.00E-172ISS
GO:0002237GO-bp Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin SoyBaseN/AISS
GO:0006887GO-bp Annotation by Michelle Graham. GO Biological Process: exocytosis SoyBaseN/AISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0000145GO-cc Annotation by Michelle Graham. GO Cellular Compartment: exocyst SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0070062GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular vesicular exosome SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2344 KOG Exocyst component protein and related proteins JGI ISS
PTHR12542Panther EXOCYST COMPLEX PROTEIN EXO70-RELATED JGI ISS
PTHR12542:SF7Panther EXOCYST COMPLEX PROTEIN EXO70 JGI ISS
PF03081PFAM Exo70 exocyst complex subunit JGI ISS
UniRef100_G7IZB2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Exocyst complex component n=1 Tax=Medicago truncatula RepID=G7IZB2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KD17UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD17_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g32420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g203900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g22160.3   sequence type=transcript   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTCGTTAAATACTAGTGGCATGTCCGTCAAAAGTCAAAAGCCACATATTGATGAAATTGTGTTGTTAGAATAATTAATTAATTACTTGCAGAGCAAATCTCCTCCACAATTTTTCTTTTTTTCTCTACCCAGGAGACTTCCTTTCAACTCAGATACTCTTTGATTCTCTTCAGGAAAACATCAACTAATTAAAATCTAATTTTGTCTTTGATACTCTTTGTCCGCGGAATTCACCACCCCCACCTTCTCAATTTGTTTGCTTTCTGCTTTCTTACCTCTTTTTTCTCAGATTTCATTTGGTTGATCCTTTCTTCAATTCTTCTTCTGGTTTTGTAGTTGTTTTTTTATCTGACTTGTGTTTCTAAAATCCATGAACCGTATGTGATTTCCAGTGTCTTTTTCTTTTTCCAGATTCCAGAAGAGAAAAAAGAAAAAAAATCCTTTTGTTTGTGTGAGACTGTAAGGATCAATTGGTTGAGTTCGCCATTTCTTGTGGCAGTTTTGTTTGAGTTTTTTGAGTTTGGAGGTTGTGTTTGGTGTTGGTGGATTACGTATTTGATTTTCATCCCTTTTTCTTCCATTAGTTGGGACTTGTTCTGGCTACTTTGTATTTCAGGGTTCAAACTTTAAGGTTTAAATCCACTTATTGTTCCTTTGAGGACCAAAAAGCATATTCTTCATTCTTACAAGCTACAACTTTTTTAACCTTTTCTTGTTTAAAGCAGTTCTGTGTGGATTTCTTCTTGCTCTTTACATTCTTTGCTGAGATGGAAGAAAATAAATCTGTGATTTCCACCTGTGAGCAAGATCAACATGTGGTTGCTGCTGCTCAGCACATTTTGAAGGCACTAGCAGCAAGTAAGACTGTATCTGAAGACTTGAGAAAAACCCTATTGGATCTTGAGACACAATTGTCTTCAATTTCCATAGTCAATGAGAGAAAACGAACAGGAATCAAGCAATTTGAGAGGCAGCTTAAGTGTGTTGAAGACAAGGTAATGAAATGGGAGACAAACCCTTCTTCCAATGAGTCTTGTGAGTATTTGAAAGTTGTTGGTGAAATCCAAACACTGATCCAGAGTTTGGAAAACTTTTCTGTGAATGAAAAGGGGAAGCCTAAGGAACTTCTAAGGAGGGCCAATGAAATTCTGCAGGTTGCTATGCCAAGCCTTGAGAAAGAACTAGTCCACATTCTTGTCCAACATAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCTAATAGAATGGATATTGTTTATGATGAATCGTTTCGTTTGGTCGAGGAAGAACAAATCAACGAGGCCTCCCGAAGTAGTAGCGGTGCTAGCCGCCAATCTGAGGCCAGCACTATTGATTTGGTGAATCCAACAGTGCTTCAACATCTCAAGAGCATTGCTAGTTTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGTCAGGTCTTTGTTACATCGAGGAGGGATGCTTTAGCTGAGTATCTTGTCATTCTTGAGATGGAAAAGTTAAGAATTGAGGATGTGATAAAACTGGAGTGGCATTGCTTGAACAACGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTTCGGGTGTACCTCGTCAGTGAGAAACGATTGTGTGAGCAAATCCTTGGTGATTTTGGATCCTTTTATCAATGCTGCTTTTCTGAAATTTCTCAGAGTTTCATGCTGCATCTCTTGAATTTTGGTGAGGCCGTGGCAATGGGAACACACACACCAGAAAAAATTTTTCGGTTACTTGACATGTATGAGGTTTTGGAGCATCTTGCTGTGGATGTAGATATTTTGTTCTTTGAAGAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCGAAGGAGCTTTGGTGAATCTGTTAAGTCTACATTTGTAGCATTCAGAAATGCTATTGCATCCAACCACTCAAAGACACCTTTTCCTCAAGGGGGTGTTCACCATGTTACCAAATATGTCATGAATTACATCATGACACTAGGTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCAGGCAACAACAACAACAAACCTGACTTACCATGTCTCTCATTGTGTCCAACGGCTTGTCAATTTCGCTCAATCACCGCAACTCTAGAATCCAACTTGAGCAACAAGTCCAAGTTATACAAAGACAAGGCCTTGCAACATGTTTTCATGATGAACAACATTCATTACATGGTGCAAAAAGTTAAGTGTTCTGGCCTAAGTCATTTCTTTGGCGATCGCTGGCTTCGCCAGCACACTGCGATGTACCAGCGCGATGCACGGTGTTATGAGATGGTCTCTTGGGGATCATTGCTATCCATGCTCAAGGAAGATAGTGTGTCAAATTGTGTCTCACGGAGAACTCTTGAGAAAAAGTGCAAAGAGTTCTGCACTGCTTTTGGTGAAGTTTACAGGGTTCAGACAGAGTGGTTCATCTCAGATCTTCTACTTCGCGAGGATCTACAAATTTCAGTGTCTCAGAAAGTTGTTCCTGCATACCGCACATACACTGGGAAAAACTCATATAACATTGCTGAGAAGTATATCAAGTACAGTGTAGATGATCTACAAAGTTATATTTTGGACCTTTTTCAAGGGTCACCAAAATCTTTGCACAAGTGAAAGGGTCTTGAATTCTTGAGTTTCATTCTTTACTTAGATCATTGTATATATTGCTTGTAATTTGGCATAGTGACACCATGGTCTTAGTTTATTAGCTTAGGGAGACTGTTATGTACTTGTTCTCCTTTGTCATCAAGTTAATAAATGAATATGATCTTAC

>Glyma06g22160.2   sequence type=CDS   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAATAAATCTGTGATTTCCACCTGTGAGCAAGATCAACATGTGGTTGCTGCTGCTCAGCACATTTTGAAGGCACTAGCAGCAAGTAAGACTGTATCTGAAGACTTGAGAAAAACCCTATTGGATCTTGAGACACAATTGTCTTCAATTTCCATAGTCAATGAGAGAAAACGAACAGGAATCAAGCAATTTGAGAGGCAGCTTAAGTGTGTTGAAGACAAGGTAATGAAATGGGAGACAAACCCTTCTTCCAATGAGTCTTGTGAGTATTTGAAAGTTGTTGGTGAAATCCAAACACTGATCCAGAGTTTGGAAAACTTTTCTGTGAATGAAAAGGGGAAGCCTAAGGAACTTCTAAGGAGGGCCAATGAAATTCTGCAGGTTGCTATGCCAAGCCTTGAGAAAGAACTAGTCCACATTCTTGTCCAACATAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCTAATAGAATGGATATTGTTTATGATGAATCGTTTCGTTTGGTCGAGGAAGAACAAATCAACGAGGCCTCCCGAAGTAGTAGCGGTGCTAGCCGCCAATCTGAGGCCAGCACTATTGATTTGGTGAATCCAACAGTGCTTCAACATCTCAAGAGCATTGCTAGTTTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGTCAGGTCTTTGTTACATCGAGGAGGGATGCTTTAGCTGAGTATCTTGTCATTCTTGAGATGGAAAAGTTAAGAATTGAGGATGTGATAAAACTGGAGTGGCATTGCTTGAACAACGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTTCGGGTGTACCTCGTCAGTGAGAAACGATTGTGTGAGCAAATCCTTGGTGATTTTGGATCCTTTTATCAATGCTGCTTTTCTGAAATTTCTCAGAGTTTCATGCTGCATCTCTTGAATTTTGGTGAGGCCGTGGCAATGGGAACACACACACCAGAAAAAATTTTTCGGTTACTTGACATGTATGAGGTTTTGGAGCATCTTGCTGTGGATGTAGATATTTTGTTCTTTGAAGAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCGAAGGAGCTTTGGTGAATCTGTTAAGTCTACATTTGTAGCATTCAGAAATGCTATTGCATCCAACCACTCAAAGACACCTTTTCCTCAAGGGGGTGTTCACCATGTTACCAAATATGTCATGAATTACATCATGACACTAGGTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCAGGCAACAACAACAACAAACCTGACTTACCATGTCTCTCATTGTGTCCAACGGCTTGTCAATTTCGCTCAATCACCGCAACTCTAGAATCCAACTTGAGCAACAAGTCCAAGTTATACAAAGACAAGGCCTTGCAACATGTTTTCATGATGAACAACATTCATTACATGGTGCAAAAAGTTAAGTGTTCTGGCCTAAGTCATTTCTTTGGCGATCGCTGGCTTCGCCAGCACACTGCGATGTACCAGCGCGATGCACGGTGTTATGAGATGGTCTCTTGGGGATCATTGCTATCCATGCTCAAGGAAGATAGTGTGTCAAATTGTGTCTCACGGAGAACTCTTGAGAAAAAGTGCAAAGAGTTCTGCACTGCTTTTGGTGAAGTTTACAGGGTTCAGACAGAGTGGTTCATCTCAGATCTTCTACTTCGCGAGGATCTACAAATTTCAGTGTCTCAGAAAGTTGTTCCTGCATACCGCACATACACTGGGAAAAACTCATATAACATTGCTGAGAAGTATATCAAGTACAGTGTAGATGATCTACAAAGTTATATTTTGGACCTTTTTCAAGGGTCACCAAAATCTTTGCACAAGTGA

>Glyma06g22160.3   sequence type=CDS   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAATAAATCTGTGATTTCCACCTGTGAGCAAGATCAACATGTGGTTGCTGCTGCTCAGCACATTTTGAAGGCACTAGCAGCAAGTAAGACTGTATCTGAAGACTTGAGAAAAACCCTATTGGATCTTGAGACACAATTGTCTTCAATTTCCATAGTCAATGAGAGAAAACGAACAGGAATCAAGCAATTTGAGAGGCAGCTTAAGTGTGTTGAAGACAAGGTAATGAAATGGGAGACAAACCCTTCTTCCAATGAGTCTTGTGAGTATTTGAAAGTTGTTGGTGAAATCCAAACACTGATCCAGAGTTTGGAAAACTTTTCTGTGAATGAAAAGGGGAAGCCTAAGGAACTTCTAAGGAGGGCCAATGAAATTCTGCAGGTTGCTATGCCAAGCCTTGAGAAAGAACTAGTCCACATTCTTGTCCAACATAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCTAATAGAATGGATATTGTTTATGATGAATCGTTTCGTTTGGTCGAGGAAGAACAAATCAACGAGGCCTCCCGAAGTAGTAGCGGTGCTAGCCGCCAATCTGAGGCCAGCACTATTGATTTGGTGAATCCAACAGTGCTTCAACATCTCAAGAGCATTGCTAGTTTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGTCAGGTCTTTGTTACATCGAGGAGGGATGCTTTAGCTGAGTATCTTGTCATTCTTGAGATGGAAAAGTTAAGAATTGAGGATGTGATAAAACTGGAGTGGCATTGCTTGAACAACGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTTCGGGTGTACCTCGTCAGTGAGAAACGATTGTGTGAGCAAATCCTTGGTGATTTTGGATCCTTTTATCAATGCTGCTTTTCTGAAATTTCTCAGAGTTTCATGCTGCATCTCTTGAATTTTGGTGAGGCCGTGGCAATGGGAACACACACACCAGAAAAAATTTTTCGGTTACTTGACATGTATGAGGTTTTGGAGCATCTTGCTGTGGATGTAGATATTTTGTTCTTTGAAGAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCGAAGGAGCTTTGGTGAATCTGTTAAGTCTACATTTGTAGCATTCAGAAATGCTATTGCATCCAACCACTCAAAGACACCTTTTCCTCAAGGGGGTGTTCACCATGTTACCAAATATGTCATGAATTACATCATGACACTAGGTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCAGGCAACAACAACAACAAACCTGACTTACCATGTCTCTCATTGTGTCCAACGGCTTGTCAATTTCGCTCAATCACCGCAACTCTAGAATCCAACTTGAGCAACAAGTCCAAGTTATACAAAGACAAGGCCTTGCAACATGTTTTCATGATGAACAACATTCATTACATGGTGCAAAAAGTTAAGTGTTCTGGCCTAAGTCATTTCTTTGGCGATCGCTGGCTTCGCCAGCACACTGCGATGTACCAGCGCGATGCACGGTGTTATGAGATGGTCTCTTGGGGATCATTGCTATCCATGCTCAAGGAAGATAGTGTGTCAAATTGTGTCTCACGGAGAACTCTTGAGAAAAAGTGCAAAGAGTTCTGCACTGCTTTTGGTGAAGTTTACAGGGTTCAGACAGAGTGGTTCATCTCAGATCTTCTACTTCGCGAGGATCTACAAATTTCAGTGTCTCAGAAAGTTGTTCCTGCATACCGCACATACACTGGGAAAAACTCATATAACATTGCTGAGAAGTATATCAAGTACAGTGTAGATGATCTACAAAGTTATATTTTGGACCTTTTTCAAGGGTCACCAAAATCTTTGCACAAGTGA

>Glyma06g22160.2   sequence type=predicted peptide   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENKSVISTCEQDQHVVAAAQHILKALAASKTVSEDLRKTLLDLETQLSSISIVNERKRTGIKQFERQLKCVEDKVMKWETNPSSNESCEYLKVVGEIQTLIQSLENFSVNEKGKPKELLRRANEILQVAMPSLEKELVHILVQHKQYFEPEYMSFHSNRMDIVYDESFRLVEEEQINEASRSSSGASRQSEASTIDLVNPTVLQHLKSIASFMFGSKYHQEFCQVFVTSRRDALAEYLVILEMEKLRIEDVIKLEWHCLNNEIKKWIRAMKIIVRVYLVSEKRLCEQILGDFGSFYQCCFSEISQSFMLHLLNFGEAVAMGTHTPEKIFRLLDMYEVLEHLAVDVDILFFEEVGSFVRGEFHKLRRSFGESVKSTFVAFRNAIASNHSKTPFPQGGVHHVTKYVMNYIMTLGEYGDTLNLLLVDESSIDPAGNNNNKPDLPCLSLCPTACQFRSITATLESNLSNKSKLYKDKALQHVFMMNNIHYMVQKVKCSGLSHFFGDRWLRQHTAMYQRDARCYEMVSWGSLLSMLKEDSVSNCVSRRTLEKKCKEFCTAFGEVYRVQTEWFISDLLLREDLQISVSQKVVPAYRTYTGKNSYNIAEKYIKYSVDDLQSYILDLFQGSPKSLHK*

>Glyma06g22160.3   sequence type=predicted peptide   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENKSVISTCEQDQHVVAAAQHILKALAASKTVSEDLRKTLLDLETQLSSISIVNERKRTGIKQFERQLKCVEDKVMKWETNPSSNESCEYLKVVGEIQTLIQSLENFSVNEKGKPKELLRRANEILQVAMPSLEKELVHILVQHKQYFEPEYMSFHSNRMDIVYDESFRLVEEEQINEASRSSSGASRQSEASTIDLVNPTVLQHLKSIASFMFGSKYHQEFCQVFVTSRRDALAEYLVILEMEKLRIEDVIKLEWHCLNNEIKKWIRAMKIIVRVYLVSEKRLCEQILGDFGSFYQCCFSEISQSFMLHLLNFGEAVAMGTHTPEKIFRLLDMYEVLEHLAVDVDILFFEEVGSFVRGEFHKLRRSFGESVKSTFVAFRNAIASNHSKTPFPQGGVHHVTKYVMNYIMTLGEYGDTLNLLLVDESSIDPAGNNNNKPDLPCLSLCPTACQFRSITATLESNLSNKSKLYKDKALQHVFMMNNIHYMVQKVKCSGLSHFFGDRWLRQHTAMYQRDARCYEMVSWGSLLSMLKEDSVSNCVSRRTLEKKCKEFCTAFGEVYRVQTEWFISDLLLREDLQISVSQKVVPAYRTYTGKNSYNIAEKYIKYSVDDLQSYILDLFQGSPKSLHK*







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