Glyma06g21510 - SoyBase

SoyBase Follow us on Twitter @SoyBaseDatabase
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g21510

Feature Type:	gene_model
Chromosome:	Gm06
Start:	18068429
stop:	18070289
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g21510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61280	AT	Annotation by Michelle Graham. TAIR10: Remorin family protein \| chr5:24643625-24644910 REVERSE LENGTH=263	SoyBase	E_val: 5.00E-28	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03763	PFAM	Remorin, C-terminal region	JGI		ISS
UniRef100_D7MUJ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Remorin family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MUJ3_ARALL	SoyBase	E_val: 3.00E-31	ISS
UniRef100_I1KCX7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KCX7_SOYBN	SoyBase	E_val: 5.00E-131	ISS

Expression Patterns of Glyma06g21510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g21510

Paralog	Evidence	Comments
Glyma04g32851	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g21510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g199700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g21510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g21510

Limit To All Plant Sequences

>Glyma06g21510.3   sequence type=transcript   gene model=Glyma06g21510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATTTTAGCTTGCTTGTGTACATTTGCTGTTCAGCTTTATAAATGTTGTGGATTACTCTCACTTCATCTTCATTCACATCACCAAAATCAAAGGTGGAAATTAAGGAAAAGTTTCAAAGAATGGATTATAGGCTCAACCAAAGAAGAGTGTCCTTTTCTGATCCAAATTCACGACAACACATACCAGATGATGAGCGTGTAACTGCAGTTGCAGCTGCTGCATTTTCCATTCATTCACTAGAAGAAGCAGGGTTACTTAATTTGCAGAAAATGAAAGAATCTCCCAAATTTCCAAGGACCAAAACTGTGAGAGAAAAAGAGTGGAAAGTATCTAGGCAACCAAGTCATGGGGAAATTTCAACAAGAAGGTCATTGGGACAAGAACTCGCTAGAGCAACAGAAAGTGCTATTCCTGCTAGACGCCCAAGTGGTGTATCCCCGGCAGCAGGGTATCAAAATCACAAAGGGAATCAAGTAATACAACACAAAAATGACAAGGCAACACTATGGGAAAAGGCCAAGATAGAGAGGATTCAAAAGAGGTATGAGAAGACAAAGTCCAAAATCCTTGCTTGGGAGAGTTATAGAAAGATTCAAGCCAAAATGCAGATGGACAGGAAGAAGAGTGAATGGGAGCACAAAAGGGCAATAGAAATGCAACATTACAAGAACAAGATAGCAAGGATAGATATGATAGCACAAGGAGCAATATCACAGTTGGAAGACCACAAAAGAAAACAAGAGTCCAAAGCAAAGGAAAAAGCAAAGAAAATCAGAAAAACAGGAAGGGTCCCTGTCAAATGTTTCTGCTTCAAATCTTTATAGGATCAAGTCATGTAGCCAGTTCCAGGAAAACAAAACAGTAGGAAATTTCATGTTGGTTCATAATATTTCTTCCTTAAATTGGCTTGGGAAATTTCATGATAATATCCACTAAACTAAGGTTAATTTTATACAAGCTATATAAGCATGCTGCTTAAATTGTTCAAATTTCATATTTGATGTAATGATATAACCTACTCAAATTGTTCTGGTTG

Coding sequences of Glyma06g21510

Limit To All Plant Sequences

>Glyma06g21510.2   sequence type=CDS   gene model=Glyma06g21510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATTTTAGCTTGCTTGTGTACATTTGCTGTTCAGCTTTATAAATGTTGTGGATTACTCTCACTTCATCTTCATTCACATCACCAAAATCAAAGGTGGAAATTAAGGAAAAGTTTCAAAGAATGGATTATAGGCTCAACCAAAGAAGATGATGAGCGTGTAACTGCAGTTGCAGCTGCTGCATTTTCCATTCATTCACTAGAAGAAGCAGGGTTACTTAATTTGCAGAAAATGAAAGAATCTCCCAAATTTCCAAGGACCAAAACTGTGAGAGAAAAAGAGTGGAAAGTATCTAGGCAACCAAGTCATGGGGAAATTTCAACAAGAAGGTCATTGGGACAAGAACTCGCTAGAGCAACAGAAAGTGCTATTCCTGCTAGACGCCCAAGTGGTGTATCCCCGGCAGCAGGGTATCAAAATCACAAAGGGAATCAAGTAATACAACACAAAAATGACAAGGCAACACTATGGGAAAAGGCCAAGATAGAGAGGATTCAAAAGAGGTATGAGAAGACAAAGTCCAAAATCCTTGCTTGGGAGAGTTATAGAAAGATTCAAGCCAAAATGCAGATGGACAGGAAGAAGAGTGAATGGGAGCACAAAAGGGCAATAGAAATGCAACATTACAAGAACAAGATAGCAAGGATAGATATGATAGCACAAGGAGCAATATCACAGTTGGAAGACCACAAAAGAAAACAAGAGTCCAAAGCAAAGGAAAAAGCAAAGAAAATCAGAAAAACAGGAAGGGTCCCTGTCAAATGTTTCTGCTTCAAATCTTTATAG

>Glyma06g21510.3   sequence type=CDS   gene model=Glyma06g21510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTGGATTACTCTCACTTCATCTTCATTCACATCACCAAAATCAAAGGTGGAAATTAAGGAAAAGTTTCAAAGAATGGATTATAGGCTCAACCAAAGAAGAGTGTCCTTTTCTGATCCAAATTCACGACAACACATACCAGATGATGAGCGTGTAACTGCAGTTGCAGCTGCTGCATTTTCCATTCATTCACTAGAAGAAGCAGGGTTACTTAATTTGCAGAAAATGAAAGAATCTCCCAAATTTCCAAGGACCAAAACTGTGAGAGAAAAAGAGTGGAAAGTATCTAGGCAACCAAGTCATGGGGAAATTTCAACAAGAAGGTCATTGGGACAAGAACTCGCTAGAGCAACAGAAAGTGCTATTCCTGCTAGACGCCCAAGTGGTGTATCCCCGGCAGCAGGGTATCAAAATCACAAAGGGAATCAAGTAATACAACACAAAAATGACAAGGCAACACTATGGGAAAAGGCCAAGATAGAGAGGATTCAAAAGAGGTATGAGAAGACAAAGTCCAAAATCCTTGCTTGGGAGAGTTATAGAAAGATTCAAGCCAAAATGCAGATGGACAGGAAGAAGAGTGAATGGGAGCACAAAAGGGCAATAGAAATGCAACATTACAAGAACAAGATAGCAAGGATAGATATGATAGCACAAGGAGCAATATCACAGTTGGAAGACCACAAAAGAAAACAAGAGTCCAAAGCAAAGGAAAAAGCAAAGAAAATCAGAAAAACAGGAAGGGTCCCTGTCAAATGTTTCTGCTTCAAATCTTTATAG

Predicted protein sequences of Glyma06g21510

Limit To All Plant Sequences

>Glyma06g21510.2   sequence type=predicted peptide   gene model=Glyma06g21510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HILACLCTFAVQLYKCCGLLSLHLHSHHQNQRWKLRKSFKEWIIGSTKEDDERVTAVAAAAFSIHSLEEAGLLNLQKMKESPKFPRTKTVREKEWKVSRQPSHGEISTRRSLGQELARATESAIPARRPSGVSPAAGYQNHKGNQVIQHKNDKATLWEKAKIERIQKRYEKTKSKILAWESYRKIQAKMQMDRKKSEWEHKRAIEMQHYKNKIARIDMIAQGAISQLEDHKRKQESKAKEKAKKIRKTGRVPVKCFCFKSL*

>Glyma06g21510.3   sequence type=predicted peptide   gene model=Glyma06g21510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLWITLTSSSFTSPKSKVEIKEKFQRMDYRLNQRRVSFSDPNSRQHIPDDERVTAVAAAAFSIHSLEEAGLLNLQKMKESPKFPRTKTVREKEWKVSRQPSHGEISTRRSLGQELARATESAIPARRPSGVSPAAGYQNHKGNQVIQHKNDKATLWEKAKIERIQKRYEKTKSKILAWESYRKIQAKMQMDRKKSEWEHKRAIEMQHYKNKIARIDMIAQGAISQLEDHKRKQESKAKEKAKKIRKTGRVPVKCFCFKSL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain